Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LL005_RS01530 Genome accession   NZ_CP086201
Coordinates   335571..336095 (+) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter roggenkampii strain F1057     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 330571..341095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL005_RS01510 (LL005_01515) aphA 330894..331607 (+) 714 WP_021242762.1 acid phosphatase AphA -
  LL005_RS01515 (LL005_01520) - 331721..332137 (+) 417 WP_023326505.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LL005_RS01520 (LL005_01525) - 332140..332493 (+) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  LL005_RS01525 (LL005_01530) uvrA 332497..335319 (-) 2823 WP_008503383.1 excinuclease ABC subunit UvrA -
  LL005_RS01530 (LL005_01535) ssb 335571..336095 (+) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LL005_RS01535 (LL005_01540) - 336158..336439 (-) 282 WP_008503385.1 YjcB family protein -
  LL005_RS01540 (LL005_01545) - 337075..338640 (+) 1566 WP_023293514.1 EAL domain-containing protein -
  LL005_RS01545 (LL005_01550) soxS 338647..338973 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  LL005_RS01550 (LL005_01555) soxR 339072..339530 (+) 459 WP_143344536.1 redox-sensitive transcriptional activator SoxR -
  LL005_RS01555 (LL005_01560) - 339905..340576 (+) 672 WP_233396215.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=623630 LL005_RS01530 WP_008503384.1 335571..336095(+) (ssb) [Enterobacter roggenkampii strain F1057]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=623630 LL005_RS01530 WP_008503384.1 335571..336095(+) (ssb) [Enterobacter roggenkampii strain F1057]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368