Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5T38_RS21370 Genome accession   NZ_CP103533
Coordinates   4416967..4417503 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 4238     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4411967..4422503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5T38_RS21340 (M5T38_21340) soxR 4412922..4413383 (-) 462 WP_259418862.1 redox-sensitive transcriptional activator SoxR -
  M5T38_RS21345 (M5T38_21345) soxS 4413469..4413792 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  M5T38_RS21350 (M5T38_21350) pdeC 4413795..4414517 (-) 723 Protein_4196 c-di-GMP phosphodiesterase PdeC -
  M5T38_RS21360 (M5T38_21360) pdeC 4415282..4416157 (-) 876 Protein_4198 c-di-GMP phosphodiesterase PdeC -
  M5T38_RS21365 (M5T38_21365) yjcB 4416587..4416868 (+) 282 WP_001295689.1 YjcB family protein -
  M5T38_RS21370 (M5T38_21370) ssb 4416967..4417503 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  M5T38_RS21375 (M5T38_21375) uvrA 4417757..4420579 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  M5T38_RS21380 (M5T38_21380) yjbR 4420614..4420970 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  M5T38_RS21385 (M5T38_21385) yjbQ 4420974..4421390 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  M5T38_RS21390 (M5T38_21390) aphA 4421501..4422214 (-) 714 WP_097707775.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=622835 M5T38_RS21370 WP_000168305.1 4416967..4417503(-) (ssb) [Escherichia coli strain 4238]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=622835 M5T38_RS21370 WP_000168305.1 4416967..4417503(-) (ssb) [Escherichia coli strain 4238]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489