Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LL045_RS08905 Genome accession   NZ_CP086083
Coordinates   1845624..1846613 (-) Length   329 a.a.
NCBI ID   WP_305774625.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1840624..1851613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS08890 (LL045_08875) - 1841990..1842916 (-) 927 WP_058205148.1 peptidyl-prolyl cis-trans isomerase -
  LL045_RS08895 (LL045_08880) - 1843070..1843753 (-) 684 WP_104141523.1 O-methyltransferase -
  LL045_RS08900 (LL045_08885) pepF 1843756..1845561 (-) 1806 WP_200984726.1 oligoendopeptidase F Regulator
  LL045_RS08905 (LL045_08890) coiA 1845624..1846613 (-) 990 WP_305774625.1 competence protein CoiA Machinery gene
  LL045_RS08910 (LL045_08895) - 1846687..1847772 (-) 1086 WP_080739875.1 YdcF family protein -
  LL045_RS08915 (LL045_08900) - 1847922..1848746 (-) 825 WP_394530077.1 alpha/beta hydrolase -
  LL045_RS08920 (LL045_08905) - 1848962..1850383 (-) 1422 WP_012898314.1 NCS2 family permease -
  LL045_RS08925 (LL045_08910) - 1850690..1851526 (+) 837 WP_038601740.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39517.21 Da        Isoelectric Point: 9.2252

>NTDB_id=622387 LL045_RS08905 WP_305774625.1 1845624..1846613(-) (coiA) [Lactococcus lactis subsp. lactis strain EIP20A]
MLTAIDENRQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLSACDLWLENESEQHLGLKKELYQWFKKT
DKVEIETYLPELKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKLRLKSLIHEDLRGKIIYLQEEIPFGQGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFVAPLGLNLLEVFDDKIPLHKFTQIKQNIKLYYENFLINFQQNSFKAVYPPRFYAIM
KKQKKDMNK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=622387 LL045_RS08905 WP_305774625.1 1845624..1846613(-) (coiA) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGTTGACAGCAATTGATGAAAATAGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGCCCTTCTTGTAAATCAGAATTATTTATAAAAAATGGTGAAATAAAGATGCCCCACTTTGCTCATAAATCTCTCAGTG
CTTGCGATTTATGGCTTGAAAATGAATCTGAACAACATTTAGGGTTAAAAAAAGAACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAGACTTATCTTCCTGAACTTAAGCAGAGACCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAACGGACAGAAAATTATCAAGTACACGGTTTTACGGTGCTTT
GGCTTATGGGACAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGCTGAGATTGAAGTCACTGATTCATGAAGATTTGCGTGGGAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGCAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCTTTCGTTGCTCC
TTTAGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAAAC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAAGCAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATAAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.767

99.088

0.751
  coiA Streptococcus pneumoniae TIGR4

43.789

97.872

0.429
  coiA Streptococcus pneumoniae Rx1

43.789

97.872

0.429
  coiA Streptococcus pneumoniae D39

43.789

97.872

0.429
  coiA Streptococcus pneumoniae R6

43.789

97.872

0.429
  coiA Streptococcus mitis NCTC 12261

43.789

97.872

0.429