Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LL045_RS08900 Genome accession   NZ_CP086083
Coordinates   1843756..1845561 (-) Length   601 a.a.
NCBI ID   WP_200984726.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838756..1850561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS08885 (LL045_08870) alaS 1839107..1841725 (-) 2619 WP_394530076.1 alanine--tRNA ligase -
  LL045_RS08890 (LL045_08875) - 1841990..1842916 (-) 927 WP_058205148.1 peptidyl-prolyl cis-trans isomerase -
  LL045_RS08895 (LL045_08880) - 1843070..1843753 (-) 684 WP_104141523.1 O-methyltransferase -
  LL045_RS08900 (LL045_08885) pepF 1843756..1845561 (-) 1806 WP_200984726.1 oligoendopeptidase F Regulator
  LL045_RS08905 (LL045_08890) coiA 1845624..1846613 (-) 990 WP_305774625.1 competence protein CoiA Machinery gene
  LL045_RS08910 (LL045_08895) - 1846687..1847772 (-) 1086 WP_080739875.1 YdcF family protein -
  LL045_RS08915 (LL045_08900) - 1847922..1848746 (-) 825 WP_394530077.1 alpha/beta hydrolase -
  LL045_RS08920 (LL045_08905) - 1848962..1850383 (-) 1422 WP_012898314.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 70005.75 Da        Isoelectric Point: 4.8526

>NTDB_id=622386 LL045_RS08900 WP_200984726.1 1843756..1845561(-) (pepF) [Lactococcus lactis subsp. lactis strain EIP20A]
MAMNRNEIPEKLTWDLTTIYKTDREWEAELTRIKSKLSLVEETDPGHLLDSAESLLTITEKMLSTSQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKISKEVYNKWLGELLKLKNYDHMFERLFAKKAHTLSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMVQLTHGNYSSLMESKNREVRKAAYQALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYDSARQAALDNNFVPEKVYDVLMEAIHQHLPLLHRYIELRKKILGISDLKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLSIFGKEYKEKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
SQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSDEDRQKYLEYLKAGSSAYP
LEVIAKAGVDMESSDYLDAAFELFENRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=622386 LL045_RS08900 WP_200984726.1 1843756..1845561(-) (pepF) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGGCTATGAATAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAGAGAATGGGA
AGCAGAGCTAACTAGAATAAAAAGCAAACTTTCACTCGTTGAAGAGACAGACCCTGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGACAATTACCGAAAAAATGCTTTCCACTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GACCAAGATACCAGAGAGGCCAAGTATCAGGAGTATCAGTCAAAAGCAACAGCCCTTTATGTGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAATTTTTAAAAATTTCAAAAGAAGTCTATAACAAATGGTTGGGGGAGCTTCTAAAATTAAAAA
ACTATGACCATATGTTTGAGCGACTTTTTGCTAAAAAAGCGCATACTCTTAGTCAAAAAGAGGAAAAGCTATTGGCTGCG
GCTGGTGAAATTTTTGAAAGTCCTTCAGAAACTTTTGAGATTTTTGATAATGCAGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGGTACAACTCACACATGGAAATTACTCTTCATTAATGGAAAGTAAGAATAGAGAAGTACGAAAAG
CAGCCTACCAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACCAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGTTCTTATGACTCAGCCCGTCAAGCTGCTTTGGATAATAATTTTGTTCCAGAAAAAGT
TTACGATGTTTTGATGGAGGCCATTCATCAACATTTGCCACTTTTACATCGTTATATTGAACTACGCAAGAAAATTTTAG
GAATTTCTGATTTAAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAGAAAGCAGAAGAAGTTTTATCGATATTTGGTAAAGAATATAAAGAAAAAGTTAAGGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGCGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTCA
ATTGGCAAGAAACATTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACACGTGAA
AGCCAACCTTATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACCACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAAGAGCGCTTCGCTCTTTTGAACCACTGGCTTGATAGTTTCCGTGGGACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGCGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGCCAAAGAAAATCCGGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCCACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAGATGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGATCCTCAGCTTATCCT
TTAGAAGTAATTGCCAAAGCTGGAGTTGATATGGAATCTAGTGATTACTTAGACGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.894

100

0.639