Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LK401_RS06015 Genome accession   NZ_CP085952
Coordinates   1185687..1187216 (-) Length   509 a.a.
NCBI ID   WP_005647634.1    Uniprot ID   A0A0Y7HS02
Organism   Haemophilus influenzae strain FDAARGOS_1560     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1180687..1192216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK401_RS05995 (LK401_05995) xylB 1181857..1183338 (+) 1482 WP_032826718.1 xylulokinase -
  LK401_RS06000 (LK401_06000) rfaD 1183389..1184315 (-) 927 WP_005690709.1 ADP-glyceromanno-heptose 6-epimerase -
  LK401_RS06005 (LK401_06005) - 1184368..1184871 (-) 504 WP_005686413.1 protein disulfide oxidoreductase -
  LK401_RS06010 (LK401_06010) deoC 1184982..1185653 (+) 672 WP_005690707.1 deoxyribose-phosphate aldolase -
  LK401_RS06015 (LK401_06015) comM 1185687..1187216 (-) 1530 WP_005647634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LK401_RS06020 (LK401_06020) yihA 1187331..1187948 (-) 618 WP_005690705.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  LK401_RS06025 (LK401_06025) - 1188053..1188919 (+) 867 WP_021034921.1 VirK/YbjX family protein -
  LK401_RS06030 (LK401_06030) oppF 1188959..1189957 (-) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  LK401_RS06035 (LK401_06035) - 1189954..1190925 (-) 972 WP_005647625.1 ABC transporter ATP-binding protein -
  LK401_RS06040 (LK401_06040) oppC 1190935..1191870 (-) 936 WP_005661282.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55918.45 Da        Isoelectric Point: 9.8668

>NTDB_id=621597 LK401_RS06015 WP_005647634.1 1185687..1187216(-) (comM) [Haemophilus influenzae strain FDAARGOS_1560]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSVQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=621597 LK401_RS06015 WP_005647634.1 1185687..1187216(-) (comM) [Haemophilus influenzae strain FDAARGOS_1560]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATTGCTATCGGGATTTTAGCTGCATCAGATCAGCTTGATGCAAGCCGTTTAAAGCAATTTGAATTTGT
GGCAGAGCTTGCGCTGACGGGCCAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACGCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCCCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGGAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTACCT
GAAATGACAGATTTAGAAGCGATAGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
GCAACGTCCTTTTCGCGCACCACACCATAGTGCATCAATGCCGGCTTTAGTTGGTGGCGGAACGATCCCTAAACCTGGCG
AAATATCCTTAGCAACAAATGGGGTGCTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGC
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCCAATGCAAAAATTCAATTCCCAGCTCGTTTTCAATTAGTGGC
AGCGATGAATCCAAGCCCTACAGGCCATTATACTGGGACACATAACCGCACTTCACCACAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTGCAAAAT
ACGGGCGATCGTGGCGAAACCAGCGTGCAAGTTCGTGAAAAAGTGTTAAAAGTACGTGAGATTCAAATGGAAAGAGCGGG
GAAAATCAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTTGGGCTTTCTGTACGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Y7HS02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.214

100

0.992
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

67.258

99.607

0.67
  comM Vibrio campbellii strain DS40M4

65.878

99.607

0.656
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475