Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HIFGL_RS00115 Genome accession   NC_022356
Coordinates   21592..22110 (-) Length   172 a.a.
NCBI ID   WP_021034365.1    Uniprot ID   -
Organism   Haemophilus influenzae KR494     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 16592..27110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIFGL_RS00080 (HifGL_000015) hpf 16844..17167 (-) 324 WP_005660635.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HIFGL_RS00085 (HifGL_000016) bamC 17336..17983 (-) 648 WP_021034361.1 outer membrane protein assembly factor BamC -
  HIFGL_RS00090 (HifGL_000017) dapA 18095..18991 (-) 897 WP_021034362.1 4-hydroxy-tetrahydrodipicolinate synthase -
  HIFGL_RS00095 (HifGL_000018) bcp 19092..19559 (+) 468 WP_021034363.1 thioredoxin-dependent thiol peroxidase -
  HIFGL_RS00100 (HifGL_000019) exbB 19702..20154 (+) 453 WP_005660631.1 TonB-system energizer ExbB -
  HIFGL_RS00105 (HifGL_000020) exbD 20158..20601 (+) 444 WP_005656183.1 TonB system transport protein ExbD -
  HIFGL_RS00110 (HifGL_000021) - 20611..21408 (+) 798 WP_021034364.1 energy transducer TonB -
  HIFGL_RS00115 (HifGL_000022) ssb 21592..22110 (-) 519 WP_021034365.1 single-stranded DNA-binding protein Machinery gene
  HIFGL_RS00120 (HifGL_000023) uvrA 22263..25094 (+) 2832 WP_021034366.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19122.96 Da        Isoelectric Point: 5.2649

>NTDB_id=62147 HIFGL_RS00115 WP_021034365.1 21592..22110(-) (ssb) [Haemophilus influenzae KR494]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGYGNDMGGAPQPSYQARQTNNGGSYQSSRPAPQSATSQPATPQAE
PPMDGFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=62147 HIFGL_RS00115 WP_021034365.1 21592..22110(-) (ssb) [Haemophilus influenzae KR494]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCGGAGATTTGCGGCGAATACTTGCGCAAAGGTTCTCAAGTGTATGTGGAAGGT
CGTTTAAAAACACGTAAATGGCAAGATCAAAATGGTCAAGATCGCTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTTATGGTAATGATATGGGCGGTGCGCCACAACCCTCTTACCAAGCTCGTCAAA
CTAACAATGGTGGTAGTTATCAATCATCTCGTCCTGCACCACAATCAGCCACATCACAACCAGCAACACCACAGGCTGAG
CCACCAATGGACGGATTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

65.761

100

0.703
  ssb Vibrio cholerae strain A1552

57.143

100

0.581
  ssb Neisseria meningitidis MC58

47.514

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

35.028

100

0.36

Multiple sequence alignment