Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   LK450_RS04830 Genome accession   NZ_CP085939
Coordinates   996375..997040 (-) Length   221 a.a.
NCBI ID   WP_003032902.1    Uniprot ID   A0A3S4LR93
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 991375..1002040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS04800 (LK450_04800) rlmN 991677..992759 (-) 1083 WP_018543645.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  LK450_RS04805 (LK450_04805) - 992793..993356 (-) 564 WP_026248195.1 YutD family protein -
  LK450_RS04810 (LK450_04810) sepM 993496..994551 (-) 1056 WP_003032358.1 SepM family pheromone-processing serine protease Regulator
  LK450_RS04815 (LK450_04815) coaD 994532..995029 (-) 498 WP_003032432.1 pantetheine-phosphate adenylyltransferase -
  LK450_RS04820 (LK450_04820) rsmD 995019..995567 (-) 549 WP_025271932.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LK450_RS04825 (LK450_04825) hpf 995755..996297 (-) 543 WP_003032381.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LK450_RS04830 (LK450_04830) comFC/cflB 996375..997040 (-) 666 WP_003032902.1 ComF family protein Machinery gene
  LK450_RS04835 (LK450_04835) comFA/cflA 997037..998338 (-) 1302 WP_022524394.1 DEAD/DEAH box helicase Machinery gene
  LK450_RS04840 (LK450_04840) - 998395..999030 (+) 636 WP_003032900.1 YigZ family protein -
  LK450_RS04845 (LK450_04845) cysK 999129..1000052 (+) 924 WP_003032904.1 cysteine synthase A -
  LK450_RS04850 (LK450_04850) - 1000352..1000825 (-) 474 Protein_965 DNA cytosine methyltransferase -
  LK450_RS04855 (LK450_04855) - 1001004..1001831 (-) 828 WP_003030992.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25613.81 Da        Isoelectric Point: 8.2065

>NTDB_id=621405 LK450_RS04830 WP_003032902.1 996375..997040(-) (comFC/cflB) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MNSCVLCENTLDEKLTFCDLLTLKKPKARACDDCFEKFQRISAQHCPKCYREGTCEVCMDCQVWIKKGKEVFHKSCFMYN
EAMKDFFSQYKFQGDYALYSVFTEVLQKELKRYSDYTLVPIPISAKKYQTRGFNQVTALLEGAKLPFKEVLEKHDTIAQS
SKTREERLQSRQCFKLKDNVQLPLKILLIDDIYTTGSTLQLAKEILVEAGVKEIVTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=621405 LK450_RS04830 WP_003032902.1 996375..997040(-) (comFC/cflB) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
ATGAATTCATGTGTTTTATGTGAAAATACACTTGATGAAAAACTAACATTCTGTGATTTATTGACCTTGAAGAAGCCAAA
AGCAAGGGCTTGTGATGACTGTTTTGAAAAATTTCAGCGCATTTCAGCGCAGCATTGCCCGAAGTGCTATCGTGAAGGGA
CGTGCGAAGTCTGCATGGATTGCCAAGTATGGATAAAAAAAGGAAAAGAAGTTTTCCATAAAAGCTGCTTTATGTATAAC
GAAGCTATGAAAGACTTCTTTAGTCAATACAAATTTCAAGGAGATTATGCCCTTTATTCTGTATTTACAGAAGTTTTGCA
AAAGGAATTAAAAAGATACAGCGATTATACGCTTGTTCCCATTCCTATAAGTGCCAAAAAGTATCAGACAAGAGGGTTTA
ATCAAGTGACAGCTCTTCTTGAGGGCGCAAAGTTGCCATTTAAGGAAGTTTTAGAAAAGCATGATACAATTGCTCAATCC
AGTAAAACAAGAGAGGAGCGATTGCAAAGCCGGCAGTGTTTTAAATTGAAAGACAACGTTCAACTTCCACTCAAAATCCT
TTTGATAGATGACATTTATACAACAGGCTCAACCCTACAATTAGCCAAGGAAATTTTAGTGGAAGCGGGAGTGAAAGAAA
TTGTGACATTTTCATTAGCCAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4LR93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.541

98.643

0.489
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae D39

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae R6

48.165

98.643

0.475