Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   HP435_RS20130 Genome accession   NZ_CP085874
Coordinates   4305734..4306012 (+) Length   92 a.a.
NCBI ID   WP_122964007.1    Uniprot ID   -
Organism   Brevibacillus sp. HD3.3A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 4300734..4311012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP435_RS20105 (HP435_20155) - 4301131..4301670 (-) 540 WP_122964010.1 PadR family transcriptional regulator -
  HP435_RS20110 (HP435_20160) - 4302000..4302380 (+) 381 Protein_3889 trypsin-like peptidase domain-containing protein -
  HP435_RS20115 (HP435_20165) - 4302459..4303577 (-) 1119 WP_122964009.1 YheC/YheD family protein -
  HP435_RS20120 (HP435_20170) - 4303817..4304137 (+) 321 WP_005828119.1 helix-turn-helix domain-containing protein -
  HP435_RS20125 (HP435_20175) - 4304274..4305722 (+) 1449 WP_173600233.1 recombinase family protein -
  HP435_RS20130 (HP435_20180) htrA 4305734..4306012 (+) 279 WP_122964007.1 S1C family serine protease Regulator
  HP435_RS20135 (HP435_20185) - 4306051..4306227 (-) 177 WP_157128119.1 hypothetical protein -
  HP435_RS20140 (HP435_20190) - 4306260..4306541 (-) 282 WP_005828113.1 DUF2325 domain-containing protein -
  HP435_RS20145 (HP435_20195) - 4306860..4307468 (+) 609 WP_122964006.1 IMEF encapsulin system ferritin-like cargo protein -
  HP435_RS20150 (HP435_20200) - 4307505..4308353 (+) 849 WP_063228109.1 family 1 encapsulin nanocompartment shell protein -
  HP435_RS20155 (HP435_20205) - 4308560..4309387 (+) 828 WP_173596900.1 alpha/beta fold hydrolase -
  HP435_RS20160 (HP435_20210) - 4309468..4310673 (-) 1206 WP_122964004.1 PLP-dependent aminotransferase family protein -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 9833.27 Da        Isoelectric Point: 6.1944

>NTDB_id=621026 HP435_RS20130 WP_122964007.1 4305734..4306012(+) (htrA) [Brevibacillus sp. HD3.3A]
MYTGGSPLGLENSVTAGIISAKNRRLQVAKRMYEEIFQTDAAINPGNSGGPLINLNGEVVGLNAFIIQSSQCLGFAIGID
ALKTQLEQYVFK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=621026 HP435_RS20130 WP_122964007.1 4305734..4306012(+) (htrA) [Brevibacillus sp. HD3.3A]
ATGTACACAGGCGGTTCCCCGCTCGGATTGGAAAATTCTGTAACCGCCGGAATTATCAGCGCAAAAAACCGTCGCCTCCA
GGTGGCAAAACGAATGTATGAAGAGATTTTCCAAACCGATGCCGCCATCAACCCCGGCAACAGTGGTGGGCCACTTATCA
ATCTGAATGGCGAGGTCGTGGGGCTGAACGCCTTTATCATCCAGTCCAGCCAATGCCTGGGCTTTGCCATCGGGATTGAC
GCACTGAAAACGCAGCTTGAGCAGTATGTTTTCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

44.118

100

0.489

  htrA Streptococcus pneumoniae Rx1

48.81

91.304

0.446

  htrA Streptococcus pneumoniae D39

48.81

91.304

0.446

  htrA Streptococcus mitis NCTC 12261

48.81

91.304

0.446

  htrA Streptococcus pneumoniae TIGR4

48.81

91.304

0.446

  htrA Streptococcus pneumoniae R6

48.81

91.304

0.446

  htrA Streptococcus gordonii str. Challis substr. CH1

41.237

100

0.435