Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K7G92_RS08660 Genome accession   NZ_CP085873
Coordinates   1836849..1838378 (+) Length   509 a.a.
NCBI ID   WP_228402661.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_D3081     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1831849..1843378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G92_RS08635 (K7G92_001729) rsmD 1832341..1832943 (+) 603 WP_228402658.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K7G92_RS08640 (K7G92_001730) - 1832955..1834469 (+) 1515 WP_226690451.1 surface lipoprotein assembly modifier -
  K7G92_RS08645 (K7G92_001731) trmL 1834595..1835071 (+) 477 WP_046339917.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  K7G92_RS08650 (K7G92_001732) - 1835136..1836008 (-) 873 WP_228402660.1 VirK/YbjX family protein -
  K7G92_RS08655 (K7G92_001733) yihA 1836119..1836739 (+) 621 WP_046339915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K7G92_RS08660 (K7G92_001734) comM 1836849..1838378 (+) 1530 WP_228402661.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K7G92_RS08665 (K7G92_001735) - 1838470..1839309 (-) 840 WP_228402663.1 divergent polysaccharide deacetylase family protein -
  K7G92_RS08670 (K7G92_001736) envC 1839306..1840535 (-) 1230 WP_160531894.1 murein hydrolase activator EnvC -
  K7G92_RS08675 (K7G92_001737) - 1840719..1841402 (+) 684 WP_049214954.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 56012.37 Da        Isoelectric Point: 9.9871

>NTDB_id=620993 K7G92_RS08660 WP_228402661.1 1836849..1838378(+) (comM) [Pasteurella canis strain HL_D3081]
MSLAIVYSRASIGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIALGMLAAAGQIEAQKLQQFEFVGELALTGELRGVQGVIPAILAAQKAKRKLIIASQNANEASLVSNQQTYFANNL
LDVVNFLNDHVNLPLASTLTTQSEVNSSVKNPLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTMLLP
DMTDQEAIETAAVTSLVHNELNFHNWKQRPFRTPHHSASIPALVGGGTIPKPGEISLAHNGVLFLDELPEFDRKVLDALR
QPLESGSIIISRANAKIEFPARFQLVAAMNPSPTGHYQGPHNRATPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQN
NHSDRGETSTQVREKVLKAREIQLARAGKINTYLTSKEIERDCKLQNKDALFLENTLTKLGLSVRAYHRILKVARTIADL
NNEMQINQNHLAEALSYRAMDRLLQKLSQ

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=620993 K7G92_RS08660 WP_228402661.1 1836849..1838378(+) (comM) [Pasteurella canis strain HL_D3081]
ATGTCTCTTGCTATTGTATATAGTCGTGCTTCTATTGGTGTACAAGCCCCTCTAGTAACAATTGAAGTACATTTTAGCAA
TGGTAAACCACAATTTAATTTAGTTGGTTTACCAGAAAAAACCGTGAAAGAAGCACAAGATCGAGTACGTAGTGCATTAT
TAAATGCTCAATTCAAATATCCTGCCAAGCGCATTACCGTTAATCTTGCACCAGCCGACTTACCCAAAGAAGGAGGGCGT
TTTGATTTACCTATTGCTCTAGGTATGCTCGCAGCAGCAGGACAAATAGAAGCACAAAAACTTCAGCAATTTGAGTTTGT
TGGTGAATTAGCACTTACTGGTGAACTACGTGGTGTACAAGGTGTTATTCCAGCCATTCTTGCTGCGCAAAAAGCAAAGC
GAAAGTTAATTATAGCCAGCCAAAATGCCAATGAAGCAAGCCTAGTTTCAAACCAGCAAACTTATTTTGCGAATAATTTA
TTAGATGTTGTGAACTTTTTAAACGATCACGTCAACTTGCCTCTAGCTTCAACATTGACTACACAAAGTGAAGTTAATTC
TTCCGTAAAAAATCCATTGGATTTAACTGATATTATTGGTCAACAACATGCTAAACGAGCCCTAACTATTGCTGCGGCAG
GACAACATAATTTACTCTTTTTGGGTCCACCAGGTACTGGAAAAACGATGTTAGCCAGTCGCTTAACCATGCTACTGCCC
GATATGACGGATCAAGAAGCAATTGAAACAGCAGCAGTAACCAGTTTAGTGCATAATGAGTTAAATTTTCATAACTGGAA
ACAACGTCCCTTTCGTACGCCTCATCATAGTGCATCCATTCCTGCTTTAGTTGGCGGTGGAACGATCCCTAAACCAGGAG
AAATCTCACTTGCTCATAATGGTGTTCTTTTTTTAGATGAGCTACCTGAATTTGACCGTAAAGTATTAGATGCATTACGC
CAACCATTAGAAAGTGGCAGTATCATTATTTCTCGTGCTAATGCAAAAATTGAATTTCCTGCACGTTTTCAACTAGTTGC
GGCAATGAACCCTAGTCCAACAGGACATTATCAAGGTCCCCATAATCGTGCCACACCACAACAAGTTATGCGATACTTAA
ACCGTCTTTCTGGACCATTTTTGGATCGTTTTGACTTATCTATTGAAGTCCCTTTATTACCACAAGGTACATTACAAAAT
AACCACAGTGATCGTGGTGAAACCAGTACTCAAGTACGTGAAAAAGTATTAAAGGCTCGAGAAATTCAACTCGCTCGAGC
TGGCAAAATTAACACATATTTAACCAGTAAAGAAATTGAACGAGATTGTAAACTTCAAAATAAAGACGCATTATTTTTAG
AAAATACACTAACTAAATTAGGACTATCAGTGCGTGCTTATCATCGTATTTTAAAAGTCGCACGCACAATTGCTGATCTC
AATAATGAAATGCAAATAAATCAAAATCATTTAGCCGAAGCGCTCAGTTATCGAGCAATGGATAGGTTATTACAAAAATT
ATCACAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.449

99.804

0.843
  comM Glaesserella parasuis strain SC1401

76.667

100

0.768
  comM Vibrio cholerae strain A1552

64.961

99.804

0.648
  comM Vibrio campbellii strain DS40M4

64.37

99.804

0.642
  comM Legionella pneumophila str. Paris

51.984

99.018

0.515
  comM Legionella pneumophila strain ERS1305867

51.984

99.018

0.515
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.899

100

0.475