Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K7G93_RS08335 Genome accession   NZ_CP085871
Coordinates   1786061..1787590 (+) Length   509 a.a.
NCBI ID   WP_226690448.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_NV12211     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1781061..1792590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G93_RS08310 (K7G93_001664) rsmD 1781553..1782155 (+) 603 WP_226690452.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K7G93_RS08315 (K7G93_001665) - 1782167..1783681 (+) 1515 WP_226690451.1 surface lipoprotein assembly modifier -
  K7G93_RS08320 (K7G93_001666) trmL 1783807..1784283 (+) 477 WP_046339917.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  K7G93_RS08325 (K7G93_001667) - 1784348..1785220 (-) 873 WP_046339916.1 DUF535 family protein -
  K7G93_RS08330 (K7G93_001668) yihA 1785331..1785951 (+) 621 WP_226690449.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K7G93_RS08335 (K7G93_001669) comM 1786061..1787590 (+) 1530 WP_226690448.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K7G93_RS08340 (K7G93_001670) - 1787682..1788521 (-) 840 WP_226690447.1 divergent polysaccharide deacetylase family protein -
  K7G93_RS08345 (K7G93_001671) envC 1788518..1789747 (-) 1230 WP_160531894.1 murein hydrolase activator EnvC -
  K7G93_RS08350 (K7G93_001672) - 1789931..1790614 (+) 684 WP_049214954.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 56091.52 Da        Isoelectric Point: 10.0682

>NTDB_id=620969 K7G93_RS08335 WP_226690448.1 1786061..1787590(+) (comM) [Pasteurella canis strain HL_NV12211]
MSLAIVYSRASIGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIALGMLAAAGQIEAQKLQQFEFVGELALTGELRGVQGVIPAILAAQKAKRKLIIASQNANEASLVSNQQTYFANNL
LDVVNFLNDRVNLPLASTLTTQSEVNFSVKNPLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTMLLP
DMTDQEAIETAAVTSLVHNELNFHNWKQRPFRTPHHSASIPALVGGGTIPKPGEISLAHNGVLFLDELPEFDRKVLDALR
QPLESGSIIISRANAKIEFPARFQLVAAMNPSPTGHYQGPHNRATPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQN
NHSDRGETSTQVREKVLKAREIQLARAGKINTYLTSKEIERDCKLQNKDALFLENTLTKLGLSVRAYHRILKVARTIADL
NNEMQINQNHLAEALSYRAMDRLLQKLSQ

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=620969 K7G93_RS08335 WP_226690448.1 1786061..1787590(+) (comM) [Pasteurella canis strain HL_NV12211]
ATGTCTCTTGCTATTGTATATAGTCGTGCTTCTATTGGTGTACAAGCCCCTCTAGTAACAATTGAAGTACATTTTAGCAA
TGGTAAACCACAATTTAATTTAGTTGGTTTACCAGAAAAAACCGTGAAAGAAGCACAAGATCGAGTACGTAGTGCATTAT
TAAATGCTCAATTCAAATATCCTGCCAAGCGCATTACCGTTAATCTTGCACCAGCCGACTTACCCAAAGAAGGAGGGCGT
TTTGATTTACCTATTGCTCTAGGTATGCTCGCAGCAGCAGGACAAATAGAAGCACAAAAACTTCAGCAATTTGAGTTTGT
TGGTGAATTAGCACTTACTGGTGAACTACGTGGTGTACAAGGTGTTATTCCAGCCATTCTTGCTGCGCAAAAAGCAAAGC
GAAAGTTAATTATAGCCAGCCAAAATGCCAATGAAGCAAGCCTAGTTTCAAACCAGCAAACTTATTTTGCGAATAATTTA
TTAGATGTTGTGAACTTTTTAAACGATCGCGTCAACTTGCCTCTAGCTTCAACATTGACTACACAAAGTGAAGTTAATTT
TTCCGTAAAAAATCCATTGGATTTAACTGATATTATTGGCCAACAACATGCTAAACGAGCCTTAACTATTGCTGCAGCAG
GACAACATAATTTACTCTTTTTGGGTCCACCAGGTACTGGAAAAACGATGTTAGCCAGTCGCTTAACCATGCTACTGCCC
GATATGACGGATCAAGAAGCAATTGAAACAGCAGCAGTAACTAGTTTGGTACATAATGAGTTAAATTTTCATAATTGGAA
ACAACGTCCCTTTCGTACGCCCCATCATAGTGCATCCATTCCTGCTTTAGTTGGCGGTGGAACGATCCCTAAACCTGGAG
AAATCTCACTTGCTCATAATGGTGTTCTTTTTTTAGATGAGCTACCTGAATTTGACCGTAAAGTATTAGATGCATTACGC
CAACCATTAGAAAGTGGCAGTATCATTATTTCTCGTGCTAATGCAAAAATTGAATTTCCTGCACGTTTTCAACTAGTTGC
GGCAATGAACCCTAGTCCAACAGGACATTATCAAGGTCCCCATAATCGTGCCACACCACAACAAGTTATGCGATACTTAA
ACCGTCTTTCTGGACCATTTTTGGATCGTTTTGACTTATCTATTGAAGTCCCTTTATTACCACAAGGTACATTACAAAAT
AACCATAGTGATCGTGGTGAAACCAGTACTCAAGTACGTGAAAAAGTATTAAAGGCTCGAGAAATTCAACTCGCTCGAGC
TGGCAAAATTAACACATATTTAACCAGTAAAGAAATTGAACGAGATTGTAAACTTCAAAATAAAGACGCATTATTTTTAG
AAAATACACTAACTAAATTAGGACTATCAGTGCGTGCTTATCATCGTATTTTAAAAGTCGCGCGCACAATTGCTGATCTC
AATAATGAAATGCAAATAAATCAAAATCATTTAGCCGAAGCGCTCAGTTATCGAGCAATGGATAGGTTATTACAAAAGTT
ATCACAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.646

99.804

0.845
  comM Glaesserella parasuis strain SC1401

76.863

100

0.77
  comM Vibrio cholerae strain A1552

64.961

99.804

0.648
  comM Vibrio campbellii strain DS40M4

64.37

99.804

0.642
  comM Legionella pneumophila str. Paris

51.984

99.018

0.515
  comM Legionella pneumophila strain ERS1305867

51.984

99.018

0.515
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.899

100

0.475