Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LJY22_RS12780 Genome accession   NZ_CP085843
Coordinates   2777277..2777816 (-) Length   179 a.a.
NCBI ID   WP_257896989.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2772277..2782816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS12760 (LJY22_12750) - 2772596..2772928 (-) 333 WP_046873588.1 hypothetical protein -
  LJY22_RS12765 (LJY22_12755) gspM 2772921..2773571 (-) 651 WP_054868338.1 type II secretion system protein GspM -
  LJY22_RS12770 (LJY22_12760) - 2773568..2775013 (-) 1446 WP_257896988.1 MSHA biogenesis protein MshI -
  LJY22_RS12775 (LJY22_12765) csrD 2775025..2777034 (-) 2010 WP_109170256.1 RNase E specificity factor CsrD -
  LJY22_RS12780 (LJY22_12770) ssb 2777277..2777816 (-) 540 WP_257896989.1 single-stranded DNA-binding protein Machinery gene
  LJY22_RS12785 (LJY22_12775) qstR 2778094..2778738 (+) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  LJY22_RS12790 (LJY22_12780) galU 2778897..2779769 (+) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LJY22_RS12795 (LJY22_12785) uvrA 2779919..2782741 (+) 2823 WP_257896990.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19919.96 Da        Isoelectric Point: 4.9164

>NTDB_id=620819 LJY22_RS12780 WP_257896989.1 2777277..2777816(-) (ssb) [Vibrio diabolicus strain NV27]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGGGAPMGGQQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=620819 LJY22_RS12780 WP_257896989.1 2777277..2777816(-) (ssb) [Vibrio diabolicus strain NV27]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAACGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAGCTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACGCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTTGGCGGTCGTGGTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAGCAGCAAG
GTGGATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAACAGCAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.81
  ssb Glaesserella parasuis strain SC1401

56.316

100

0.598
  ssb Neisseria meningitidis MC58

46.369

100

0.464
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.464