Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   LJY22_RS12785 Genome accession   NZ_CP085843
Coordinates   2778094..2778738 (+) Length   214 a.a.
NCBI ID   WP_005397417.1    Uniprot ID   A0AAQ2J3W0
Organism   Vibrio diabolicus strain NV27     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2773094..2783738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS12770 (LJY22_12760) - 2773568..2775013 (-) 1446 WP_257896988.1 MSHA biogenesis protein MshI -
  LJY22_RS12775 (LJY22_12765) csrD 2775025..2777034 (-) 2010 WP_109170256.1 RNase E specificity factor CsrD -
  LJY22_RS12780 (LJY22_12770) ssb 2777277..2777816 (-) 540 WP_257896989.1 single-stranded DNA-binding protein Machinery gene
  LJY22_RS12785 (LJY22_12775) qstR 2778094..2778738 (+) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  LJY22_RS12790 (LJY22_12780) galU 2778897..2779769 (+) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LJY22_RS12795 (LJY22_12785) uvrA 2779919..2782741 (+) 2823 WP_257896990.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24483.41 Da        Isoelectric Point: 9.7165

>NTDB_id=620820 LJY22_RS12785 WP_005397417.1 2778094..2778738(+) (qstR) [Vibrio diabolicus strain NV27]
MRKSAYARKLFLISMEDNAQKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGLFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=620820 LJY22_RS12785 WP_005397417.1 2778094..2778738(+) (qstR) [Vibrio diabolicus strain NV27]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAGGTGGCGGCACTCGA
AAAATACATTGATATGAGCATCCCGGTGATTTCGACCGAAGCACTCATGGAAGCTAAGCCACAGCATCGTAATAAAATCC
TACTGATCGACTTCAGTGAACATAAATCACTCGTTCAATCGATCAAAAACTTACCGCTGGTATGGAAGAACTTTGAAACC
GTTGTGTTCAATGTCCCTAAAAGGCTGACCACGGATGAGCTTCTTTCATTTGGTCAATTAAAGGGGCTGTTCTATTCCGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAGGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGTAACGTCATTAACACTCATACTGCCCCAGCCACGGTAGACCTAACCATTCGCGAGCTGCAA
GTACTGCGTTGCTTGCAAGCTGGTGCCTCGAACAGCCAAATGGCCGAGGAATTATTTGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCAGTGAAGAATCGCGTTCAAGCAATCGCTTGGGCAGATCAAAATTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.794

100

0.958
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.804

100

0.528