Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | N646_RS08835 | Genome accession | NC_022349 |
| Coordinates | 1935727..1936266 (-) | Length | 179 a.a. |
| NCBI ID | WP_005387798.1 | Uniprot ID | A0A2I3CBE0 |
| Organism | Vibrio alginolyticus NBRC 15630 = ATCC 17749 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1930727..1941266
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N646_RS08815 (N646_1796) | - | 1931047..1931379 (-) | 333 | WP_005381196.1 | hypothetical protein | - |
| N646_RS08820 (N646_1797) | gspM | 1931372..1932022 (-) | 651 | WP_005381197.1 | type II secretion system protein GspM | - |
| N646_RS08825 (N646_1798) | - | 1932019..1933464 (-) | 1446 | WP_005387799.1 | hypothetical protein | - |
| N646_RS08830 (N646_1799) | csrD | 1933476..1935485 (-) | 2010 | WP_005381201.1 | RNase E specificity factor CsrD | - |
| N646_RS08835 (N646_1800) | ssb | 1935727..1936266 (-) | 540 | WP_005387798.1 | single-stranded DNA-binding protein | Machinery gene |
| N646_RS08840 (N646_1801) | qstR | 1936544..1937188 (+) | 645 | WP_005381237.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| N646_RS08845 (N646_1802) | galU | 1937348..1938220 (+) | 873 | WP_005381239.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| N646_RS08850 (N646_1803) | uvrA | 1938370..1941192 (+) | 2823 | WP_005381241.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19902.97 Da Isoelectric Point: 4.9164
>NTDB_id=62035 N646_RS08835 WP_005387798.1 1935727..1936266(-) (ssb) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=62035 N646_RS08835 WP_005387798.1 1935727..1936266(-) (ssb) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTATTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTATTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
79.781 |
100 |
0.816 |
| ssb | Glaesserella parasuis strain SC1401 |
54.922 |
100 |
0.592 |
| ssb | Neisseria meningitidis MC58 |
45.405 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
46.369 |
100 |
0.464 |