Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | N646_RS08840 | Genome accession | NC_022349 |
| Coordinates | 1936544..1937188 (+) | Length | 214 a.a. |
| NCBI ID | WP_005381237.1 | Uniprot ID | A0A2I3CB98 |
| Organism | Vibrio alginolyticus NBRC 15630 = ATCC 17749 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1931544..1942188
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N646_RS08825 (N646_1798) | - | 1932019..1933464 (-) | 1446 | WP_005387799.1 | hypothetical protein | - |
| N646_RS08830 (N646_1799) | csrD | 1933476..1935485 (-) | 2010 | WP_005381201.1 | RNase E specificity factor CsrD | - |
| N646_RS08835 (N646_1800) | ssb | 1935727..1936266 (-) | 540 | WP_005387798.1 | single-stranded DNA-binding protein | Machinery gene |
| N646_RS08840 (N646_1801) | qstR | 1936544..1937188 (+) | 645 | WP_005381237.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| N646_RS08845 (N646_1802) | galU | 1937348..1938220 (+) | 873 | WP_005381239.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| N646_RS08850 (N646_1803) | uvrA | 1938370..1941192 (+) | 2823 | WP_005381241.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 214 a.a. Molecular weight: 24397.32 Da Isoelectric Point: 9.8721
>NTDB_id=62036 N646_RS08840 WP_005381237.1 1936544..1937188(+) (qstR) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS
Nucleotide
Download Length: 645 bp
>NTDB_id=62036 N646_RS08840 WP_005381237.1 1936544..1937188(+) (qstR) [Vibrio alginolyticus NBRC 15630 = ATCC 17749]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACAGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CATGA
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACAGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
94.86 |
100 |
0.949 |
| qstR | Vibrio campbellii strain DS40M4 |
89.252 |
100 |
0.893 |
| qstR | Vibrio cholerae strain A1552 |
51.869 |
100 |
0.519 |