NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	K7G91_RS08775	Genome accession	NZ_CP085791
Coordinates	1859584..1860282 (+)	Length	232 a.a.
NCBI ID	WP_227797816.1	Uniprot ID	-
Organism	Pasteurella canis strain HL_D1250
Function	require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 1854584..1865282

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K7G91_RS08755 (K7G91_001748)	-	1854905..1856023 (-)	1119	WP_227797812.1	TniQ family protein	-
K7G91_RS08760 (K7G91_001749)	-	1855981..1856874 (-)	894	WP_227797813.1	TniB family NTP-binding protein	-
K7G91_RS08765 (K7G91_001750)	-	1856874..1858793 (-)	1920	WP_227797814.1	Mu transposase C-terminal domain-containing protein	-
K7G91_RS08770 (K7G91_001751)	-	1858786..1859448 (-)	663	WP_227797815.1	TnsA endonuclease N-terminal domain-containing protein	-
K7G91_RS08775 (K7G91_001752)	comM	1859584..1860282 (+)	699	WP_227797816.1	ATP-binding protein	Machinery gene
K7G91_RS08780 (K7G91_001753)	-	1860374..1861213 (-)	840	WP_227797817.1	divergent polysaccharide deacetylase family protein	-
K7G91_RS08785 (K7G91_001754)	envC	1861210..1862439 (-)	1230	WP_160531894.1	murein hydrolase activator EnvC	-
K7G91_RS08790 (K7G91_001755)	-	1862623..1863306 (+)	684	WP_049214954.1	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	-

Sequence

Protein

Download Length: 232 a.a. Molecular weight: 26241.18 Da Isoelectric Point: 9.8395

                                >NTDB_id=619977 K7G91_RS08775 WP_227797816.1 1859584..1860282(+) (comM) [Pasteurella canis strain HL_D1250]

MTLICNFDSGTIPKPGEISLAHNGVLFLDELPEFDRKVLDALRQPLESGSIIISRANAKIEFPARFQLVAAMNPSPTGHY

QGPHNRATPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQNNHSDRGETSTQVREKVLKAREIQLARAGKINTYLTSK

EIERDCKLQNKDALFLEKTLTKLGLSVRAYHRILKVARTIADLNNEMQINQNHLAEALSYRAMDRLLQKLSQ

Nucleotide

Download Length: 699 bp

                                >NTDB_id=619977 K7G91_RS08775 WP_227797816.1 1859584..1860282(+) (comM) [Pasteurella canis strain HL_D1250]

GTGACACTTATTTGTAACTTTGACAGTGGAACGATCCCTAAACCTGGAGAAATCTCACTTGCTCATAATGGTGTTCTTTT

TTTAGATGAGCTACCTGAATTTGACCGTAAAGTATTAGATGCATTACGCCAACCATTAGAAAGTGGCAGTATCATTATTT

CTCGTGCTAATGCAAAAATTGAATTTCCTGCACGTTTTCAACTAGTTGCGGCAATGAACCCTAGTCCAACAGGACATTAT

CAAGGTCCCCATAATCGTGCCACACCACAACAAGTTATGCGATACTTAAACCGTCTTTCTGGACCATTTTTGGATCGTTT

TGACTTATCTATTGAAGTCCCTTTATTACCACAAGGTACATTACAAAATAACCACAGTGATCGTGGTGAAACCAGTACTC

AAGTACGTGAAAAAGTATTAAAGGCTCGAGAAATTCAACTCGCTCGAGCTGGCAAAATTAACACATATTTAACCAGTAAA

GAAATTGAACGAGATTGTAAACTTCAAAATAAAGACGCATTATTTTTAGAAAAGACACTAACTAAATTAGGACTATCAGT

GCGTGCTTATCATCGTATTTTAAAAGTCGCGCGCACAATTGCTGATCTCAATAATGAAATGCAAATAAATCAAAATCATT

TAGCCGAAGCGCTCAGTTATCGAGCAATGGATAGGTTATTACAAAAATTATCACAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(129-221)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(9-118)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Haemophilus influenzae Rd KW20	85.202	96.121	0.819
comM	Glaesserella parasuis strain SC1401	77.729	98.707	0.767
comM	Vibrio cholerae strain A1552	67.713	96.121	0.651
comM	Vibrio campbellii strain DS40M4	65.022	96.121	0.625
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	50.22	97.845	0.491
comM	Legionella pneumophila str. Paris	52.804	92.241	0.487
comM	Legionella pneumophila strain ERS1305867	52.804	92.241	0.487

Detailed information NTG0619977