Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LJU36_RS04250 Genome accession   NZ_CP085774
Coordinates   885855..886382 (+) Length   175 a.a.
NCBI ID   WP_023302928.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 48947CZ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 880855..891382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU36_RS04230 (LJU36_04230) aphA 881179..881892 (+) 714 WP_017382626.1 acid phosphatase AphA -
  LJU36_RS04235 (LJU36_04235) - 882005..882421 (+) 417 WP_017382627.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LJU36_RS04240 (LJU36_04240) - 882424..882777 (+) 354 WP_017382628.1 MmcQ/YjbR family DNA-binding protein -
  LJU36_RS04245 (LJU36_04245) uvrA 882781..885603 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  LJU36_RS04250 (LJU36_04250) ssb 885855..886382 (+) 528 WP_023302928.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LJU36_RS04255 (LJU36_04255) - 886444..886725 (-) 282 WP_003860282.1 YjcB family protein -
  LJU36_RS04260 (LJU36_04260) - 887169..888569 (+) 1401 WP_032667875.1 sensor domain-containing diguanylate cyclase -
  LJU36_RS04265 (LJU36_04265) - 888835..890397 (+) 1563 WP_227801596.1 EAL domain-containing protein -
  LJU36_RS04270 (LJU36_04270) soxS 890404..890730 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  LJU36_RS04275 (LJU36_04275) soxR 890829..891287 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18707.71 Da        Isoelectric Point: 5.2456

>NTDB_id=619872 LJU36_RS04250 WP_023302928.1 885855..886382(+) (ssb) [Enterobacter hormaechei strain 48947CZ]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=619872 LJU36_RS04250 WP_023302928.1 885855..886382(+) (ssb) [Enterobacter hormaechei strain 48947CZ]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAATGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGGGTGGTTGGG
GTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCGGCA
CCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.789
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.6
  ssb Neisseria meningitidis MC58

47.222

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.486
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.366