Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LJU37_RS11185 Genome accession   NZ_CP085767
Coordinates   2350132..2350656 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain 49589CZ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2345132..2355656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU37_RS11165 (LJU37_11165) aphA 2345456..2346169 (+) 714 WP_047052074.1 acid phosphatase AphA -
  LJU37_RS11170 (LJU37_11170) - 2346282..2346698 (+) 417 WP_047052076.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LJU37_RS11175 (LJU37_11175) - 2346701..2347054 (+) 354 WP_039272020.1 MmcQ/YjbR family DNA-binding protein -
  LJU37_RS11180 (LJU37_11180) uvrA 2347058..2349880 (-) 2823 WP_047052078.1 excinuclease ABC subunit UvrA -
  LJU37_RS11185 (LJU37_11185) ssb 2350132..2350656 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LJU37_RS11190 (LJU37_11190) - 2350815..2352062 (+) 1248 WP_047058417.1 site-specific integrase -
  LJU37_RS11195 (LJU37_11195) - 2352049..2353422 (+) 1374 WP_342454843.1 site-specific integrase -
  LJU37_RS11200 (LJU37_11200) - 2353445..2354592 (+) 1148 WP_088581786.1 IS3 family transposase -
  LJU37_RS11205 (LJU37_11205) - 2354610..2354819 (+) 210 Protein_2168 recombinase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=619860 LJU37_RS11185 WP_003860284.1 2350132..2350656(+) (ssb) [Enterobacter hormaechei strain 49589CZ]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=619860 LJU37_RS11185 WP_003860284.1 2350132..2350656(+) (ssb) [Enterobacter hormaechei strain 49589CZ]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374