Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LJU43_RS07480 Genome accession   NZ_CP085753
Coordinates   1541448..1541972 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain 57816CZ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1536448..1546972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU43_RS07450 (LJU43_07450) soxR 1536542..1537000 (-) 459 WP_180258962.1 redox-sensitive transcriptional activator SoxR -
  LJU43_RS07455 (LJU43_07455) soxS 1537099..1537425 (+) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  LJU43_RS07460 (LJU43_07460) - 1537432..1538997 (-) 1566 WP_015570189.1 EAL domain-containing protein -
  LJU43_RS07470 (LJU43_07470) - 1539263..1540662 (-) 1400 Protein_1452 sensor domain-containing diguanylate cyclase -
  LJU43_RS07475 (LJU43_07475) - 1541106..1541387 (+) 282 WP_003860282.1 YjcB family protein -
  LJU43_RS07480 (LJU43_07480) ssb 1541448..1541972 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LJU43_RS07485 (LJU43_07485) uvrA 1542224..1545046 (+) 2823 WP_045141429.1 excinuclease ABC subunit UvrA -
  LJU43_RS07490 (LJU43_07490) - 1545050..1545403 (-) 354 WP_045141430.1 MmcQ/YjbR family DNA-binding protein -
  LJU43_RS07495 (LJU43_07495) - 1545406..1545822 (-) 417 WP_022650227.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LJU43_RS07500 (LJU43_07500) aphA 1545935..1546648 (-) 714 WP_045141431.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=619779 LJU43_RS07480 WP_003860284.1 1541448..1541972(-) (ssb) [Enterobacter hormaechei strain 57816CZ]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=619779 LJU43_RS07480 WP_003860284.1 1541448..1541972(-) (ssb) [Enterobacter hormaechei strain 57816CZ]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCTGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374