Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LJU46_RS00470 Genome accession   NZ_CP085748
Coordinates   91818..92342 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain 59732CZ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 86818..97342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU46_RS00440 (LJU46_00440) soxR 86912..87370 (-) 459 WP_180258962.1 redox-sensitive transcriptional activator SoxR -
  LJU46_RS00445 (LJU46_00445) soxS 87469..87795 (+) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  LJU46_RS00450 (LJU46_00450) - 87802..89367 (-) 1566 WP_015570189.1 EAL domain-containing protein -
  LJU46_RS00460 (LJU46_00460) - 89633..91032 (-) 1400 Protein_85 sensor domain-containing diguanylate cyclase -
  LJU46_RS00465 (LJU46_00465) - 91476..91757 (+) 282 WP_003860282.1 YjcB family protein -
  LJU46_RS00470 (LJU46_00470) ssb 91818..92342 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LJU46_RS00475 (LJU46_00475) uvrA 92594..95416 (+) 2823 WP_045141429.1 excinuclease ABC subunit UvrA -
  LJU46_RS00480 (LJU46_00480) - 95420..95773 (-) 354 WP_045141430.1 MmcQ/YjbR family DNA-binding protein -
  LJU46_RS00485 (LJU46_00485) - 95776..96192 (-) 417 WP_022650227.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LJU46_RS00490 (LJU46_00490) aphA 96305..97018 (-) 714 WP_045141431.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=619754 LJU46_RS00470 WP_003860284.1 91818..92342(-) (ssb) [Enterobacter hormaechei strain 59732CZ]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=619754 LJU46_RS00470 WP_003860284.1 91818..92342(-) (ssb) [Enterobacter hormaechei strain 59732CZ]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCTGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374