Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M892_RS10685 Genome accession   NC_022269
Coordinates   2331433..2332956 (+) Length   507 a.a.
NCBI ID   WP_005535577.1    Uniprot ID   A0A812GMI9
Organism   Vibrio campbellii ATCC BAA-1116     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2326433..2337956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M892_RS10670 (M892_10680) ilvE 2328077..2329015 (-) 939 WP_005429790.1 branched-chain-amino-acid transaminase -
  M892_RS10675 (M892_10685) ilvM 2329028..2329312 (-) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  M892_RS10680 (M892_10690) ilvG 2329324..2330970 (-) 1647 WP_012126648.1 acetolactate synthase 2 catalytic subunit -
  M892_RS10685 (M892_10695) comM 2331433..2332956 (+) 1524 WP_005535577.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M892_RS10690 (M892_10700) - 2332967..2333800 (-) 834 WP_021017937.1 sensor domain-containing diguanylate cyclase -
  M892_RS10695 (M892_10705) - 2333945..2334901 (-) 957 WP_012126646.1 DUF2860 domain-containing protein -
  M892_RS10700 (M892_10710) - 2335071..2335949 (+) 879 WP_012126645.1 acyltransferase -
  M892_RS10705 (M892_10715) - 2336002..2337327 (-) 1326 WP_011999187.1 IS4 family transposase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54922.00 Da        Isoelectric Point: 8.8465

>NTDB_id=61958 M892_RS10685 WP_005535577.1 2331433..2332956(+) (comM) [Vibrio campbellii ATCC BAA-1116]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRHLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKELKAHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAIVKERVNQARDCMLARSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=61958 M892_RS10685 WP_005535577.1 2331433..2332956(+) (comM) [Vibrio campbellii ATCC BAA-1116]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAAAGATCGCGTACGAAGTGCGATCG
TCAATTCTAACTTTCAGTTTCCTGCAAAACGAATCACGGTCAATTTGGCACCGGCGGATTTGCCTAAAGAAGGCGGGCGC
TTCGATCTGCCGATTGCATTGGGAATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCTCTTTCTGGTGGATTGAGAACGGTAAAAGGCGTGCTGCCAGCTGCGTTGGCTGCGAACAAAAAACAGC
GCCATTTAGTGGTGCCTCATGCTAATGGCGATCAGGCGGCACTTGTCGGCAAAGAGCAGCACAAATCTGCCCAATCACTA
TTGGAAGTTTGTGCTGAGCTGTGTGGCCAACATCAACTGAACTTGTATCAAACGCCCAAGAAAAAAGAGCTCAAAGCACA
CGGTCGTGACTTGCAGGATATCATTGGTCAGCAGCAGGGAAAGCGCGCTTTAGAAATTGCGGCAGCTGGCAATCACAACC
TGCTTTTCCTTGGCCCTCCAGGCACTGGCAAAACCATGTTGGCCTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAGGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGTGAAATCAATGAACATAACTGGAAGACGCGGCCGTT
TCGTGCCCCGCATCATTCCAGCTCCATGGCGGCTTTAGTTGGTGGTGGATCTGTGCCGAGACCGGGCGAAATATCTCTAG
CTCACAACGGGTTATTGTTTTTGGACGAAATGCCGGAGTTTGATCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCTGGTGAAATTATTATTTCTCGGGCGCAAGGTAAGACGCGTTTTCCTGCTCGGTTTCAAATTGTAGGGGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGCAACCAAGCTAGAACGAATCCGCAAGCCATCCTGCGTTACCTTGGCCGATTATCAG
GCCCACTTCTTGATCGCTTTGATATGTCATTAGAAATTCCTGCACTGCCGAAAGGAACTCTCTCTGAAGGCGGCGATAGA
GGGGAACCAACGGCTATCGTCAAAGAGCGGGTGAATCAAGCACGTGACTGTATGCTGGCTCGCAGTGGTAAGGTGAATGC
ATTATTGGGCAGTCGTGAAATTGAAGCCTTCTGCCCGCTGCAAAAAAGTGATGCGGAGTTTTTGGAAAATGCGCTGCATC
GCCTTGGATTGTCGATTCGTGCTTATCACCGCATCATCAAAGTTGCGCGTACTATTGCCGATCTGGAGGGTTCACCGCAA
ATTGAGCGAACGCACCTAGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAACAGTTAACCGCACAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812GMI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

100

100

1
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

63.922

100

0.643
  comM Legionella pneumophila str. Paris

50.201

98.225

0.493
  comM Legionella pneumophila strain ERS1305867

50.201

98.225

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment