Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIT37_RS22620 Genome accession   NZ_CP085714
Coordinates   4529367..4529891 (-) Length   174 a.a.
NCBI ID   WP_252288050.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4524367..4534891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS22600 (LIT37_22650) rplI 4525221..4525670 (-) 450 WP_127762372.1 50S ribosomal protein L9 -
  LIT37_RS22605 (LIT37_22655) - 4525667..4527637 (-) 1971 WP_252288046.1 DHH family phosphoesterase -
  LIT37_RS22610 (LIT37_22660) - 4527673..4528614 (-) 942 WP_252288048.1 YybS family protein -
  LIT37_RS22615 (LIT37_22665) rpsR 4529088..4529327 (-) 240 WP_119118359.1 30S ribosomal protein S18 -
  LIT37_RS22620 (LIT37_22670) ssbA 4529367..4529891 (-) 525 WP_252288050.1 single-stranded DNA-binding protein Machinery gene
  LIT37_RS22625 (LIT37_22675) rpsF 4529963..4530250 (-) 288 WP_119118357.1 30S ribosomal protein S6 -
  LIT37_RS22630 (LIT37_22680) ychF 4530475..4531575 (-) 1101 WP_127762377.1 redox-regulated ATPase YchF -
  LIT37_RS22635 (LIT37_22685) - 4531692..4531889 (-) 198 WP_119118368.1 DUF951 domain-containing protein -
  LIT37_RS22640 (LIT37_22690) - 4531892..4532746 (-) 855 WP_252288052.1 mechanosensitive ion channel family protein -
  LIT37_RS22645 (LIT37_22695) yyaC 4533025..4533654 (+) 630 WP_127762379.1 spore protease YyaC -
  LIT37_RS22650 (LIT37_22700) - 4533866..4534570 (-) 705 WP_252288054.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19315.02 Da        Isoelectric Point: 4.6562

>NTDB_id=619559 LIT37_RS22620 WP_252288050.1 4529367..4529891(-) (ssbA) [Peribacillus asahii strain CK1]
MMNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRTFSNQQGDRDADFINCVVWRKPAENVANYLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEIVADSVQFLEPRSSSAGGRNEGGSYGAQRGYNDNNYDNPFGGNPNPNQNQRNNDNFTRVDDDPFAN
DGKTIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=619559 LIT37_RS22620 WP_252288050.1 4529367..4529891(-) (ssbA) [Peribacillus asahii strain CK1]
ATGATGAATCGCGTAGTTTTAGTAGGTCGCTTAACGAAAGATCCTGATTTGCGATATACACCAAATGGAGTACCTGTAGC
TACCTTTACTTTAGCTGTTAATCGAACGTTTTCGAATCAGCAAGGTGATCGTGATGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCTGCAGAAAATGTAGCAAACTATTTGAAAAAAGGTAGTTTAGCTGGCGTGGATGGACGTATCCAAACACGT
AATTATGAGGGACAAGACGGCAAACGCGTATATGTGACAGAGATTGTAGCTGATAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGGAAGAAATGAAGGCGGTTCTTACGGAGCTCAAAGAGGTTATAACGATAACAACTATGATAATCCGT
TTGGAGGAAATCCAAATCCAAATCAGAATCAACGCAACAATGATAACTTCACTCGTGTAGATGATGATCCATTCGCAAAT
GACGGTAAAACAATCGACATTTCCGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.056

100

0.713
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.552
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.92

0.379
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.374
  ssb Neisseria gonorrhoeae MS11

35

100

0.362