Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LIT37_RS16350 Genome accession   NZ_CP085714
Coordinates   3260679..3260993 (-) Length   104 a.a.
NCBI ID   WP_286676482.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3255679..3265993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS16315 (LIT37_16355) - 3256165..3257853 (+) 1689 WP_252286715.1 SNF2-related protein -
  LIT37_RS16320 (LIT37_16360) - 3257831..3258625 (+) 795 WP_252286716.1 YqhG family protein -
  LIT37_RS16325 (LIT37_16365) - 3258705..3258902 (-) 198 WP_252286717.1 YqzE family protein -
  LIT37_RS16330 (LIT37_16370) comGG 3259133..3259513 (-) 381 WP_252286718.1 competence type IV pilus minor pilin ComGG -
  LIT37_RS16335 (LIT37_16375) comGF 3259503..3259949 (-) 447 WP_252286719.1 competence type IV pilus minor pilin ComGF -
  LIT37_RS16340 (LIT37_16380) - 3259933..3260271 (-) 339 WP_252286720.1 hypothetical protein -
  LIT37_RS16345 (LIT37_16385) comGD 3260258..3260692 (-) 435 WP_252286721.1 competence type IV pilus minor pilin ComGD -
  LIT37_RS16350 (LIT37_16390) comGC 3260679..3260993 (-) 315 WP_286676482.1 competence type IV pilus major pilin ComGC Machinery gene
  LIT37_RS16355 (LIT37_16395) comGB 3261007..3262059 (-) 1053 WP_252286723.1 competence type IV pilus assembly protein ComGB -
  LIT37_RS16360 (LIT37_16400) comGA 3262025..3263068 (-) 1044 WP_252286724.1 competence type IV pilus ATPase ComGA Machinery gene
  LIT37_RS16365 (LIT37_16405) - 3263520..3264221 (+) 702 WP_252286725.1 helix-turn-helix domain-containing protein -
  LIT37_RS16370 (LIT37_16410) - 3264309..3264551 (+) 243 WP_119115521.1 DUF2626 domain-containing protein -
  LIT37_RS16375 (LIT37_16415) - 3264597..3265673 (-) 1077 WP_252286726.1 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11542.49 Da        Isoelectric Point: 8.5074

>NTDB_id=619534 LIT37_RS16350 WP_286676482.1 3260679..3260993(-) (comGC) [Peribacillus asahii strain CK1]
MKRLRNQKGFTLIEMLIVLLIISVLLIITIPNITKHQSTVQTKGCEAFVKMVQSQVQAYEIDHNKWPANVAELKTEGYLV
QTTCPNGGTVSIDSDGKVKADAKE

Nucleotide


Download         Length: 315 bp        

>NTDB_id=619534 LIT37_RS16350 WP_286676482.1 3260679..3260993(-) (comGC) [Peribacillus asahii strain CK1]
TTGAAAAGATTACGCAATCAAAAAGGATTTACTCTCATCGAGATGCTCATTGTCTTGCTCATTATTTCTGTTTTGTTAAT
CATTACGATACCGAATATTACAAAACATCAATCGACGGTTCAGACAAAAGGATGTGAAGCATTTGTAAAAATGGTACAGT
CCCAAGTGCAAGCTTATGAAATTGATCATAATAAATGGCCAGCTAATGTAGCGGAACTGAAAACGGAAGGCTATTTAGTA
CAAACTACATGTCCAAATGGAGGTACGGTTAGCATTGATAGCGATGGAAAGGTAAAAGCTGATGCTAAAGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

52.577

93.269

0.49
  comGC Staphylococcus aureus MW2

47.573

99.038

0.471
  comGC Staphylococcus aureus N315

47.573

99.038

0.471
  comYC Streptococcus suis isolate S10

42.857

87.5

0.375
  comGC Lactococcus lactis subsp. cremoris KW2

49.351

74.038

0.365
  comGC/cglC Streptococcus mitis SK321

42.222

86.538

0.365