Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LIT37_RS16360 Genome accession   NZ_CP085714
Coordinates   3262025..3263068 (-) Length   347 a.a.
NCBI ID   WP_252286724.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3257025..3268068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS16320 (LIT37_16360) - 3257831..3258625 (+) 795 WP_252286716.1 YqhG family protein -
  LIT37_RS16325 (LIT37_16365) - 3258705..3258902 (-) 198 WP_252286717.1 YqzE family protein -
  LIT37_RS16330 (LIT37_16370) comGG 3259133..3259513 (-) 381 WP_252286718.1 competence type IV pilus minor pilin ComGG -
  LIT37_RS16335 (LIT37_16375) comGF 3259503..3259949 (-) 447 WP_252286719.1 competence type IV pilus minor pilin ComGF -
  LIT37_RS16340 (LIT37_16380) - 3259933..3260271 (-) 339 WP_252286720.1 hypothetical protein -
  LIT37_RS16345 (LIT37_16385) comGD 3260258..3260692 (-) 435 WP_252286721.1 competence type IV pilus minor pilin ComGD -
  LIT37_RS16350 (LIT37_16390) comGC 3260679..3260993 (-) 315 WP_286676482.1 competence type IV pilus major pilin ComGC Machinery gene
  LIT37_RS16355 (LIT37_16395) comGB 3261007..3262059 (-) 1053 WP_252286723.1 competence type IV pilus assembly protein ComGB -
  LIT37_RS16360 (LIT37_16400) comGA 3262025..3263068 (-) 1044 WP_252286724.1 competence type IV pilus ATPase ComGA Machinery gene
  LIT37_RS16365 (LIT37_16405) - 3263520..3264221 (+) 702 WP_252286725.1 helix-turn-helix domain-containing protein -
  LIT37_RS16370 (LIT37_16410) - 3264309..3264551 (+) 243 WP_119115521.1 DUF2626 domain-containing protein -
  LIT37_RS16375 (LIT37_16415) - 3264597..3265673 (-) 1077 WP_252286726.1 SAM-dependent methyltransferase -
  LIT37_RS16380 (LIT37_16420) - 3265753..3266922 (-) 1170 WP_252286727.1 M20 family metallopeptidase -
  LIT37_RS16385 (LIT37_16425) - 3266968..3267591 (-) 624 WP_127761370.1 MBL fold metallo-hydrolase -
  LIT37_RS16390 (LIT37_16430) - 3267803..3267976 (+) 174 WP_119115525.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38946.11 Da        Isoelectric Point: 9.6420

>NTDB_id=619535 LIT37_RS16360 WP_252286724.1 3262025..3263068(-) (comGA) [Peribacillus asahii strain CK1]
MSIEKTADDILKRAIRLAASDIHILPRKEGPLVRFRIDNRLIPQETLSFEETERLISHLKYLASMDIGEKRRPQNGSITL
HLENQVIGLRLSTLPTAYVESLAIRLIPQQNILPLNQLSLFPTTTKRLISLLKHSHGMIIFTGPTGSGKTTTLYSILHHV
QELYNRHVITLEDPIENQSENVLQVQINEKAGITYSVGLKAALRHDPDVIMVGEIRDSETAKIAIRAALTGHLLLTTMHS
RDAAGAISRLLEFGVSWLEIEQSLIAVTAQRLVELKNRRIVGGSANKRASVYELLYGRDLVKVLQGVKGENIEARHRTLK
EEIGKAVAMGFVENKEFERLVFIDERG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=619535 LIT37_RS16360 WP_252286724.1 3262025..3263068(-) (comGA) [Peribacillus asahii strain CK1]
ATGTCTATTGAAAAAACGGCAGATGATATTTTGAAGCGTGCTATCAGGTTAGCTGCATCAGATATTCATATTTTGCCTCG
CAAAGAAGGTCCGCTCGTTCGATTTCGAATCGATAATCGACTCATTCCCCAAGAAACTCTCTCTTTTGAAGAAACAGAAC
GCCTTATCTCTCATCTCAAATATCTCGCATCAATGGATATCGGTGAAAAAAGAAGACCCCAAAACGGTTCGATTACGCTT
CATTTAGAAAATCAAGTGATTGGACTTAGATTATCAACATTACCTACAGCATATGTTGAAAGTTTAGCCATTCGTTTAAT
TCCCCAGCAAAACATTCTGCCACTTAACCAACTCTCCCTTTTTCCAACCACTACCAAGCGATTGATTTCCCTTTTAAAGC
ACTCACATGGAATGATTATTTTTACAGGTCCGACTGGATCAGGCAAAACGACAACGCTGTACTCTATTCTTCATCATGTG
CAGGAATTGTATAACCGCCATGTTATTACTCTTGAAGATCCTATCGAAAATCAATCCGAAAACGTATTGCAAGTTCAAAT
TAACGAGAAAGCGGGAATTACGTATTCAGTCGGTTTAAAGGCAGCTTTACGTCACGATCCTGATGTAATTATGGTGGGAG
AAATTCGTGATTCAGAAACAGCTAAAATAGCGATTAGGGCGGCACTTACAGGCCATTTACTGTTAACAACGATGCATAGC
CGCGATGCCGCAGGAGCTATTTCACGGCTGTTAGAGTTTGGTGTAAGCTGGTTAGAAATTGAACAAAGTTTAATTGCTGT
AACGGCACAACGTTTAGTCGAATTAAAAAATCGAAGAATAGTAGGCGGTTCTGCAAATAAGCGAGCAAGTGTGTATGAAC
TTCTTTATGGGAGAGATTTAGTGAAAGTGTTACAAGGAGTAAAAGGAGAGAATATCGAAGCTCGTCATCGAACATTGAAA
GAAGAAATCGGTAAAGCTGTAGCGATGGGCTTTGTCGAAAACAAAGAATTTGAAAGATTGGTATTTATTGATGAGAGGGG
GTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

53.429

100

0.539
  pilB Haemophilus influenzae 86-028NP

39.296

98.271

0.386
  pilB Haemophilus influenzae Rd KW20

38.166

97.406

0.372
  pilB Glaesserella parasuis strain SC1401

42

86.455

0.363