Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LHK11_RS02575 Genome accession   NZ_CP085688
Coordinates   603042..603563 (+) Length   173 a.a.
NCBI ID   WP_140172640.1    Uniprot ID   -
Organism   Providencia rettgeri strain 06-1619     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 598042..608563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHK11_RS02570 (LHK11_02570) uvrA 599255..602089 (-) 2835 WP_140172639.1 excinuclease ABC subunit UvrA -
  LHK11_RS02575 (LHK11_02575) ssb 603042..603563 (+) 522 WP_140172640.1 single-stranded DNA-binding protein Machinery gene
  LHK11_RS02580 (LHK11_02580) - 603847..604254 (-) 408 WP_004260890.1 helix-turn-helix domain-containing protein -
  LHK11_RS02585 (LHK11_02585) - 604497..605669 (-) 1173 WP_140172641.1 MFS transporter -
  LHK11_RS02590 (LHK11_02590) ivbL 606003..606092 (+) 90 WP_109912586.1 ilvB operon leader peptide IvbL -
  LHK11_RS02595 (LHK11_02595) ilvB 606196..607893 (+) 1698 WP_140172660.1 acetolactate synthase large subunit -
  LHK11_RS02600 (LHK11_02600) ilvN 607896..608180 (+) 285 WP_140172642.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18555.55 Da        Isoelectric Point: 4.9468

>NTDB_id=619304 LHK11_RS02575 WP_140172640.1 603042..603563(+) (ssb) [Providencia rettgeri strain 06-1619]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAASQGQGSQGGWGQPQQPQAAQQFSGGGAPAARSSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=619304 LHK11_RS02575 WP_140172640.1 603042..603563(+) (ssb) [Providencia rettgeri strain 06-1619]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCGGAAGTGGCAGGTGAATACCTGAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACACGACAGAAGTGGTTGTGAATATCGG
CGGCTCAATGCAAATGCTAGGTGGCCGTGGCGGTGATGCAGCATCACAAGGTCAAGGCAGCCAAGGCGGTTGGGGCCAAC
CTCAACAGCCGCAAGCAGCACAGCAATTTAGTGGTGGCGGAGCTCCAGCCGCACGCTCATCAGCGCCTGCTCCACAGACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.111

100

0.74
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.624
  ssb Neisseria meningitidis MC58

48.023

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.491
  ssb Latilactobacillus sakei subsp. sakei 23K

35

100

0.364