Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LJU29_RS00655 Genome accession   NZ_CP085684
Coordinates   138233..139726 (+) Length   497 a.a.
NCBI ID   WP_257111531.1    Uniprot ID   -
Organism   Pseudomonas ficuserectae strain ZJDX-003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 133233..144726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU29_RS00645 - 136448..137302 (-) 855 WP_257111530.1 hypothetical protein -
  LJU29_RS00650 - 137512..138054 (-) 543 WP_005757516.1 GNAT family N-acetyltransferase -
  LJU29_RS00655 comM 138233..139726 (+) 1494 WP_257111531.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LJU29_RS00660 - 139795..141102 (-) 1308 WP_002551489.1 CitMHS family transporter -
  LJU29_RS00665 - 141397..141798 (+) 402 WP_004655387.1 GFA family protein -
  LJU29_RS00670 - 141865..143262 (-) 1398 WP_257111532.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53096.94 Da        Isoelectric Point: 7.7173

>NTDB_id=619269 LJU29_RS00655 WP_257111531.1 138233..139726(+) (comM) [Pseudomonas ficuserectae strain ZJDX-003]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPEGAVKENKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVSHL
LELVAHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQVPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAQARERQQRRQGCANAFLDLPGLREHCALSSVDERWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
ITRSHLAEALQYRPSTN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=619269 LJU29_RS00655 WP_257111531.1 138233..139726(+) (comM) [Pseudomonas ficuserectae strain ZJDX-003]
ATGTCGCTGGCTATCGTCCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCGGCGGTTACTGTTGAAGCGCATCTGGCCAA
CGGCCTGCCGGCCCTGACGCTGGTGGGGTTGCCGGAGGGGGCGGTCAAGGAGAACAAGGACCGGGTGCGCAGTGCCATTC
TCAATTCCGGGCTGGATTTTCCGGCGCGGCGTATCACGCTCAACCTTGCGCCGGCTGATTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGTTTGCTGGCGGCCAGCGGGCAGGTGCCGCTGGTTGCGTTGCAGGATGTCGAATGCCT
GGGCGAGCTGGCGCTGTCGGGGGCGATTCGGCCGATTCAGGGGGTGCTGCCTGCTGCGCTGGCGGCACGTGCGGCGGAGC
GGACGCTGATCATTCCGGCGGTGAATGCGGAGGAAGCTTGTCTGGCCTCGGGGCTGCGGGTGATTGCGGTGAGTCACTTG
CTGGAGCTGGTCGCGCATTTCAACGGTCGCACGGTGATTGCGCCGTATCAGTCCAGCGGCCTGCTGCATCAGCCCAAGCC
GTATCCGGACCTTAGCGAAGTGCAGGGCCAAACCGCCGCGAAGCGTGCGTTGGTGATTGCCGCTGCGGGTGCGCACAACC
TGCTGTTCAGTGGGCCACCCGGCACCGGCAAGACATTGCTCGCCAGCCGCCTGCCGGGTTTGTTGCCGCCGCTGGATGAG
CACGAAGCGCTTGAAGTGGCGGCGATTCAGTCGGTTGCCAGCCAGGTGCCGCTGACCAGTTGGCCGCAGCGGCCGTTTCG
GCAGCCGCATCACTCGGCGTCCGGGCCTGCATTGGTGGGCGGTGGCAGTCGTCCGCAACCTGGCGAAATCACGTTGGCAC
ATCACGGCGTGCTGTTTCTTGATGAACTGCCGGAGTTCGATCGCCGTGTGCTGGAGGTTTTGCGTGAGCCGCTGGAGTCC
GGGCATATCGTGATTTCCCGTGCGCGGGATCGCGTGCGCTTTCCGGCGCGTTTCCAGTTGGTGGCGGCGATGAACCCATG
CCCCTGTGGATATCTGGGTGAGCCGACCGGGCGCTGCCGTTGTTCCACCGAGCAGGTGCAGCGCTATCGCAACAAGTTGT
CCGGCCCGCTGCTGGACCGGATTGATCTGCACCTGACCGTCGCCCGCGAAGCCACCGCCCTCAACCCTGACCCGACCACC
AGTGAGAACACTGCAAGCGCGGCAGCGGTGGTTGCGCAGGCCAGAGAACGGCAGCAACGTCGTCAGGGCTGTGCCAATGC
GTTTCTCGACCTACCGGGGCTGCGCGAGCACTGCGCGCTGTCCAGTGTCGATGAACGCTGGCTGGAGACGGCCTGCGAGC
GCCTGACTCTCTCATTACGTTCGGCGCATCGCCTGCTGAAAGTGGCGCGAACGCTGGCTGATCTGGAGCAGGTGGATGCG
ATCACTCGTAGCCATCTGGCCGAGGCGTTGCAGTACCGGCCTTCAACCAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Glaesserella parasuis strain SC1401

53.6

100

0.539
  comM Haemophilus influenzae Rd KW20

53.2

100

0.535
  comM Vibrio campbellii strain DS40M4

53.737

99.598

0.535
  comM Legionella pneumophila str. Paris

48.713

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.713

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459