Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HWQ47_RS02665 Genome accession   NZ_CP085636
Coordinates   599625..601148 (-) Length   507 a.a.
NCBI ID   WP_269969657.1    Uniprot ID   -
Organism   Shewanella sp. MTB7     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 594625..606148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ47_RS02640 (HWQ47_02645) - 594939..595709 (+) 771 WP_269969652.1 TetR/AcrR family transcriptional regulator -
  HWQ47_RS02645 (HWQ47_02650) - 595823..596920 (+) 1098 WP_269969653.1 branched-chain amino acid aminotransferase -
  HWQ47_RS02650 (HWQ47_02655) - 597005..597391 (-) 387 WP_269969654.1 hypothetical protein -
  HWQ47_RS02655 (HWQ47_02660) - 597676..598593 (-) 918 WP_269969655.1 acyltransferase -
  HWQ47_RS02660 (HWQ47_02665) - 598601..599506 (-) 906 WP_269969656.1 acyltransferase -
  HWQ47_RS02665 (HWQ47_02670) comM 599625..601148 (-) 1524 WP_269969657.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HWQ47_RS02670 (HWQ47_02675) - 601396..602361 (+) 966 WP_269969658.1 glucosaminidase domain-containing protein -
  HWQ47_RS02675 (HWQ47_02680) - 602381..603667 (-) 1287 WP_269969659.1 anaerobic sulfatase maturase -
  HWQ47_RS02680 (HWQ47_02685) - 603722..604015 (-) 294 Protein_528 arylsulfatase -
  HWQ47_RS02685 (HWQ47_02690) - 604034..605263 (-) 1230 WP_269969660.1 arylsulfatase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55534.87 Da        Isoelectric Point: 8.6036

>NTDB_id=618995 HWQ47_RS02665 WP_269969657.1 599625..601148(-) (comM) [Shewanella sp. MTB7]
MAIACVATRASKGVDAPPVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSAIINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQIPKKALIDHEFVGELALSGHIRHSHGLLPVIVEARKQDTKLVIPLDNRADAELVGYNKVHFASHL
QGLSEYLHGQSPLPGIEPGLEWIEHEAVSEHGCFSEVIGQYHAKHGLEIAAAGNHNILLLGPPGTGKSMLASRMMQLLPP
LGYDEALEVATLHSVAGHEIQPKQFYTRPFRNPHHTSSAISLVGGGSIPKPGEISLAHRGVLFLDEVVEFPRKVLDCLRE
PMEAGEVVISRAAAKLTFLSRFQLIAAMNPSPCGDIDNARATPDQIQRYLSRLSGPFLDRFDLTIEVPRLPEGALTQTDT
KSETSAKIAQRVKQAREIQLSRAGCLNSELTGKQLKELGRFKQADLLFLEQSVNKLNLSIRSFHRLQRVSRTIADLQQSQ
TVERNHIAQALGYRAMDRLLNSLKSSY

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=618995 HWQ47_RS02665 WP_269969657.1 599625..601148(-) (comM) [Shewanella sp. MTB7]
ATGGCCATCGCCTGTGTCGCCACACGAGCCAGCAAAGGCGTCGACGCTCCTCCCGTTACCGTTGAGGTTCATCTAAGTAA
TGGACTACCTGCATTCAACTTAGTTGGTTTGCCAGAAACCTCAGTCAAGGAAGCCAAAGAACGGGTACGCAGCGCTATCA
TCAACGCTGGCTTCGAATTCCCCATGCGTAGAATAACCGTCAATTTAGCGCCAGCAGATCTGCCTAAGCAGGGAGGTCGT
TATGACCTTCCTATTGCCATAGGTATATTGGCAGCCTCGAAACAGATCCCTAAGAAAGCACTTATCGATCATGAATTTGT
CGGTGAACTCGCACTATCCGGTCACATCAGACATAGCCATGGACTCTTACCGGTTATTGTCGAAGCTCGTAAGCAAGATA
CCAAACTCGTTATACCACTGGATAACCGCGCCGATGCTGAGCTTGTGGGATATAACAAGGTTCACTTTGCCTCTCATCTG
CAAGGGTTAAGTGAATACCTCCATGGCCAATCTCCCCTACCGGGTATAGAGCCAGGCTTAGAGTGGATAGAACATGAGGC
TGTATCAGAGCATGGTTGCTTCAGCGAAGTAATAGGCCAATACCATGCCAAGCATGGATTAGAGATAGCCGCAGCTGGTA
ACCACAACATTTTACTGCTCGGTCCCCCAGGAACAGGAAAGAGTATGCTGGCCAGCCGCATGATGCAGCTCTTACCACCT
CTGGGTTACGATGAGGCACTGGAAGTTGCCACTCTTCATTCGGTCGCTGGTCATGAGATCCAACCTAAACAGTTTTATAC
TCGCCCATTTCGAAATCCACACCATACCAGCTCAGCTATCTCACTTGTAGGTGGAGGCAGCATACCGAAACCCGGCGAGA
TATCATTGGCCCATCGCGGTGTACTATTTCTTGACGAGGTGGTTGAGTTCCCCCGAAAAGTACTCGACTGTCTTCGTGAG
CCTATGGAGGCTGGTGAAGTAGTGATCTCCCGCGCAGCCGCTAAACTCACCTTCTTAAGTCGCTTTCAGTTAATCGCAGC
CATGAATCCCAGTCCTTGTGGTGATATAGACAATGCCAGAGCCACGCCGGATCAGATACAGCGCTATCTTTCACGCCTGT
CAGGTCCTTTTCTCGATCGATTCGATCTCACCATAGAGGTACCACGACTACCTGAAGGGGCACTAACCCAAACTGATACC
AAGTCGGAGACCAGCGCCAAAATAGCACAGAGAGTAAAACAGGCCAGAGAAATACAGCTTAGTCGTGCCGGATGTCTCAA
CAGTGAGTTGACCGGTAAACAACTCAAAGAACTGGGTCGCTTCAAACAAGCAGATCTGCTTTTTCTGGAACAAAGCGTCA
ATAAACTAAATCTGTCGATACGCAGTTTTCATCGCCTACAACGGGTATCACGCACCATTGCAGATCTGCAACAGAGTCAA
ACCGTAGAGCGTAACCATATTGCTCAGGCACTCGGTTACCGTGCAATGGACAGGTTGCTAAACAGCCTAAAAAGCAGTTA
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.795

100

0.552
  comM Vibrio cholerae strain A1552

54.617

100

0.548
  comM Vibrio campbellii strain DS40M4

53.15

100

0.533
  comM Glaesserella parasuis strain SC1401

53.057

100

0.531
  comM Legionella pneumophila str. Paris

49.098

98.422

0.483
  comM Legionella pneumophila strain ERS1305867

49.098

98.422

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.34

99.211

0.43