Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NW967_RS05775 Genome accession   NZ_CP102952
Coordinates   1204975..1205847 (+) Length   290 a.a.
NCBI ID   WP_000593192.1    Uniprot ID   A0A0H2XFM6
Organism   Staphylococcus aureus strain 39-B-49     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1199975..1210847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW967_RS05755 (NW967_05755) sucC 1200089..1201255 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  NW967_RS05760 (NW967_05760) sucD 1201277..1202185 (+) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  NW967_RS05765 (NW967_05765) - 1202412..1203530 (+) 1119 WP_001041673.1 LysM peptidoglycan-binding domain-containing protein -
  NW967_RS05770 (NW967_05770) fmhC 1203558..1204802 (+) 1245 WP_000672869.1 FemA/FemB family glycyltransferase FmhC -
  NW967_RS05775 (NW967_05775) dprA 1204975..1205847 (+) 873 WP_000593192.1 DNA-processing protein DprA Machinery gene
  NW967_RS05780 (NW967_05780) topA 1206021..1208096 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  NW967_RS05785 (NW967_05785) trmFO 1208252..1209559 (+) 1308 WP_000195260.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33564.99 Da        Isoelectric Point: 9.5094

>NTDB_id=618995 NW967_RS05775 WP_000593192.1 1204975..1205847(+) (dprA) [Staphylococcus aureus strain 39-B-49]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=618995 NW967_RS05775 WP_000593192.1 1204975..1205847(+) (dprA) [Staphylococcus aureus strain 39-B-49]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XFM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

100

100

1
  dprA Staphylococcus aureus N315

99.655

100

0.997