Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LJQ72_RS19925 Genome accession   NZ_CP085633
Coordinates   4436814..4438340 (+) Length   508 a.a.
NCBI ID   WP_039286281.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain TS20HJ1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4431814..4443340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJQ72_RS19905 (LJQ72_19905) - 4433252..4434178 (-) 927 WP_014916970.1 branched-chain amino acid transaminase -
  LJQ72_RS19910 (LJQ72_19910) ilvM 4434203..4434463 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  LJQ72_RS19915 (LJQ72_19915) ilvG 4434521..4436167 (-) 1647 WP_039286279.1 acetolactate synthase 2 catalytic subunit -
  LJQ72_RS19920 (LJQ72_19920) ilvL 4436308..4436406 (-) 99 WP_071531109.1 ilv operon leader peptide -
  LJQ72_RS19925 (LJQ72_19925) comM 4436814..4438340 (+) 1527 WP_039286281.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LJQ72_RS19930 (LJQ72_19930) - 4438398..4438736 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  LJQ72_RS19935 (LJQ72_19935) hdfR 4438857..4439684 (+) 828 WP_010283922.1 HTH-type transcriptional regulator HdfR -
  LJQ72_RS19940 (LJQ72_19940) yjfF 4439706..4440668 (-) 963 WP_227527415.1 galactofuranose ABC transporter, permease protein YjfF -
  LJQ72_RS19945 (LJQ72_19945) ytfT 4440668..4441678 (-) 1011 WP_010283927.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  LJQ72_RS19950 (LJQ72_19950) ytfR 4441668..4443185 (-) 1518 WP_040034473.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55532.20 Da        Isoelectric Point: 6.6907

>NTDB_id=618991 LJQ72_RS19925 WP_039286281.1 4436814..4438340(+) (comM) [Pectobacterium brasiliense strain TS20HJ1]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPFEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=618991 LJQ72_RS19925 WP_039286281.1 4436814..4438340(+) (comM) [Pectobacterium brasiliense strain TS20HJ1]
ATGTCATTGGCAGTTACCTATACTCGAGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCATATCAGCAG
CGGGCTACCAGCCCTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAACCTCGCTCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATAAAGTCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACCCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGTTCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAGGCTAAACGCGCGTTAGAAATCGCGGCGGCAGGCGGTCACA
ACCTGCTCTTGCTAGGGCCTCCGGGAACAGGGAAAACCATGTTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCTTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTATGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
TCCAAGCCCCTCAGGACACTATCAGGGCGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTACTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAACGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTCGCGCGCACGATCGCTGACCTCGGCGGTCGGGAT
AATATTGAAAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.427

99.606

0.642
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.065

100

0.632
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.943

99.803

0.469