Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LCH97_RS09750 Genome accession   NZ_CP085530
Coordinates   2052001..2053515 (-) Length   504 a.a.
NCBI ID   WP_227301555.1    Uniprot ID   -
Organism   Vogesella sp. XCS3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2047001..2058515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH97_RS09720 (LCH97_09720) - 2047142..2048041 (+) 900 WP_227301551.1 RimK family alpha-L-glutamate ligase -
  LCH97_RS09725 (LCH97_09725) purB 2048114..2049484 (+) 1371 WP_017508266.1 adenylosuccinate lyase -
  LCH97_RS09735 (LCH97_09735) - 2049761..2050579 (-) 819 WP_227301552.1 undecaprenyl-diphosphate phosphatase -
  LCH97_RS09740 (LCH97_09740) - 2050651..2051256 (-) 606 WP_227301553.1 thiol:disulfide interchange protein DsbA/DsbL -
  LCH97_RS09745 (LCH97_09745) - 2051272..2051886 (-) 615 WP_227301554.1 SPOR domain-containing protein -
  LCH97_RS09750 (LCH97_09750) comM 2052001..2053515 (-) 1515 WP_227301555.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LCH97_RS09755 (LCH97_09755) - 2053522..2053794 (-) 273 WP_227301556.1 accessory factor UbiK family protein -
  LCH97_RS09760 (LCH97_09760) glnK 2054043..2054381 (+) 339 WP_017510221.1 P-II family nitrogen regulator -
  LCH97_RS09765 (LCH97_09765) - 2054405..2055712 (+) 1308 WP_304956706.1 ammonium transporter -
  LCH97_RS09770 (LCH97_09770) - 2055793..2056224 (-) 432 WP_227301557.1 ClpXP protease specificity-enhancing factor -
  LCH97_RS09775 (LCH97_09775) - 2056319..2056921 (-) 603 WP_026108187.1 glutathione S-transferase N-terminal domain-containing protein -
  LCH97_RS09780 (LCH97_09780) - 2057155..2057916 (-) 762 WP_227301558.1 cytochrome c1 -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54093.25 Da        Isoelectric Point: 7.2654

>NTDB_id=618860 LCH97_RS09750 WP_227301555.1 2052001..2053515(-) (comM) [Vogesella sp. XCS3]
MSLAVCLSRALAGISAPEVAVEVHLANGLPAFTLVGLPDTEVKESRERVRAAIIQSGFDFPARRITVNLAPADLPKESGR
FDLPIAVALLAADGQLPLDVLSGYELAGELGLGGELRPVRGALAMVAAARSSGRRFILPRSSAIEASLVQGVEIYAADSL
VEVCAHLSGISLLERTVYPEGWQGQVVYPDLDEVKGQGLPKLALEVAAAGGHSLLMQGPPGTGKSMLAARLPGILPAMSQ
DEALESAAVQSLGSQGFDVRLWCVRPYRHPHHTASAVALVGGGSDPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPLE
TGEIHISRAARQVCYPARFQLLAAMNPCPCGYLGHARRTCRCTPEQVLRYRGKLSGPLLDRFDLMVEVGSLSLDELQTLP
AGESSARVRERVDAARQCQWQRQGKSNASLQAAELALHCALSPVLQQQLNQLLEKLDLSARAYHRVLRVARTLADLAGSQ
EVSRQHILQAVQFRRGLAGFAAGK

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=618860 LCH97_RS09750 WP_227301555.1 2052001..2053515(-) (comM) [Vogesella sp. XCS3]
ATGTCGCTCGCGGTCTGCTTGAGCCGCGCGCTTGCCGGCATCAGTGCACCCGAGGTGGCGGTCGAAGTGCACCTGGCTAA
CGGCCTGCCCGCCTTTACCCTGGTAGGGTTGCCGGATACCGAGGTAAAGGAAAGTCGCGAACGGGTGCGCGCTGCGATCA
TCCAGTCCGGTTTTGATTTTCCGGCCCGTCGCATTACGGTGAATCTGGCGCCTGCCGACTTACCGAAAGAGTCGGGCCGT
TTTGATTTACCCATTGCTGTGGCATTGTTGGCCGCAGATGGCCAGCTGCCACTAGATGTGTTGTCCGGCTACGAATTGGC
CGGTGAGCTTGGTTTGGGCGGGGAGCTCAGGCCTGTTCGTGGTGCATTGGCCATGGTGGCGGCGGCACGTAGTAGTGGCA
GGCGCTTTATCCTGCCCAGAAGTAGTGCAATAGAGGCGTCCTTGGTGCAGGGGGTCGAGATCTATGCTGCGGATAGCTTG
GTAGAAGTTTGTGCACATCTATCAGGCATCAGCCTGCTGGAACGCACCGTTTATCCCGAGGGATGGCAAGGCCAGGTGGT
TTATCCCGATCTGGACGAGGTGAAAGGTCAGGGCTTGCCCAAGCTGGCATTGGAAGTGGCCGCTGCCGGTGGGCATAGCC
TGTTGATGCAGGGCCCTCCGGGTACGGGGAAGTCCATGTTGGCCGCACGCTTGCCCGGCATTTTGCCGGCAATGAGCCAA
GATGAGGCGCTAGAGAGTGCTGCTGTGCAGTCTTTGGGCAGCCAAGGCTTTGATGTGCGTTTATGGTGCGTTAGGCCCTA
TCGGCACCCGCATCACACCGCTTCCGCGGTGGCGTTGGTGGGCGGCGGGTCAGATCCGCGCCCGGGCGAGATCACGCTGG
CGCATCATGGCGTACTGTTTCTGGATGAATTGCCCGAGTTTGACCGCAAAGTGCTGGAGGTCTTACGGGAACCTCTTGAG
ACTGGAGAGATTCATATATCCCGTGCCGCGCGTCAGGTGTGTTATCCGGCCAGGTTCCAGCTGTTGGCCGCCATGAACCC
TTGCCCTTGTGGCTACCTGGGGCATGCGCGTCGCACTTGCCGCTGTACGCCGGAGCAGGTTTTGCGCTATCGGGGTAAAC
TGTCGGGTCCGTTGCTGGACAGGTTTGATTTGATGGTAGAAGTCGGGTCGCTCTCGCTTGACGAGTTGCAGACGTTACCC
GCTGGCGAGTCTAGCGCGCGGGTGCGTGAGCGGGTAGATGCCGCCCGGCAGTGTCAGTGGCAGCGTCAGGGCAAGAGCAA
TGCCAGTTTGCAAGCTGCCGAGCTCGCTTTGCACTGTGCCTTGTCGCCAGTCTTGCAGCAGCAGCTCAATCAGCTACTGG
AAAAACTGGATTTGTCAGCCCGTGCGTATCACCGCGTATTGCGTGTGGCGCGCACACTGGCCGATCTGGCGGGAAGCCAG
GAAGTGTCACGCCAGCATATCCTGCAGGCGGTACAGTTCCGGCGAGGGTTGGCCGGCTTTGCCGCGGGCAAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.621

98.413

0.518
  comM Vibrio campbellii strain DS40M4

52.121

98.214

0.512
  comM Haemophilus influenzae Rd KW20

51.297

99.405

0.51
  comM Glaesserella parasuis strain SC1401

51.2

99.206

0.508
  comM Legionella pneumophila str. Paris

49.4

99.206

0.49
  comM Legionella pneumophila strain ERS1305867

49.4

99.206

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.622

99.603

0.444