Detailed information
Bioinformatically predicted
Overview
| Name | comA/nlmT | Type | Regulator |
| Locus tag | Ped0620_RS00450 | Genome accession | NZ_CP085471 |
| Coordinates | 89955..92129 (+) | Length | 724 a.a. |
| NCBI ID | WP_248912901.1 | Uniprot ID | - |
| Organism | Pediococcus pentosaceus strain MGB0620 | ||
| Function | transport of ComC (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 85607..117263 | 89955..92129 | within | 0 |
Gene organization within MGE regions
Location: 85607..117263
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Ped0620_RS00425 (Ped0620_00430) | - | 85610..86368 (+) | 759 | WP_002834215.1 | ChbG/HpnK family deacetylase | - |
| Ped0620_RS00430 (Ped0620_00435) | - | 86748..87026 (-) | 279 | WP_002834213.1 | bacteriocin immunity protein | - |
| Ped0620_RS00435 (Ped0620_00440) | - | 87041..87223 (-) | 183 | WP_011672822.1 | class II bacteriocin | - |
| Ped0620_RS00440 (Ped0620_00445) | - | 88186..88956 (+) | 771 | WP_229564806.1 | GHKL domain-containing protein | - |
| Ped0620_RS00445 (Ped0620_00450) | - | 88975..89721 (+) | 747 | WP_248912900.1 | LytTR family DNA-binding domain-containing protein | - |
| Ped0620_RS00450 (Ped0620_00455) | comA/nlmT | 89955..92129 (+) | 2175 | WP_248912901.1 | peptide cleavage/export ABC transporter | Regulator |
| Ped0620_RS00455 (Ped0620_00460) | - | 92412..93326 (-) | 915 | WP_061812734.1 | metal ABC transporter solute-binding protein | - |
| Ped0620_RS00460 (Ped0620_00465) | - | 93397..93516 (-) | 120 | WP_011672827.1 | putative metal homeostasis protein | - |
| Ped0620_RS00465 (Ped0620_00470) | - | 94104..94496 (+) | 393 | WP_011672828.1 | hypothetical protein | - |
| Ped0620_RS00470 (Ped0620_00475) | - | 94588..95106 (-) | 519 | WP_248912902.1 | GNAT family N-acetyltransferase | - |
| Ped0620_RS00475 (Ped0620_00480) | - | 95336..97147 (+) | 1812 | WP_248912903.1 | heavy metal translocating P-type ATPase | - |
| Ped0620_RS00480 (Ped0620_00485) | - | 97404..98699 (+) | 1296 | WP_061812736.1 | PTS transporter subunit EIIC | - |
| Ped0620_RS00485 (Ped0620_00490) | - | 98683..99546 (+) | 864 | WP_061812737.1 | alpha/beta hydrolase | - |
| Ped0620_RS00490 (Ped0620_00495) | - | 99657..100307 (-) | 651 | WP_248912904.1 | hypothetical protein | - |
| Ped0620_RS00495 (Ped0620_00500) | - | 100659..101546 (-) | 888 | WP_023439782.1 | MurR/RpiR family transcriptional regulator | - |
| Ped0620_RS00500 (Ped0620_00505) | - | 101760..102788 (+) | 1029 | WP_248912905.1 | Gfo/Idh/MocA family oxidoreductase | - |
| Ped0620_RS00505 (Ped0620_00510) | - | 102812..103786 (+) | 975 | WP_061812740.1 | Gfo/Idh/MocA family oxidoreductase | - |
| Ped0620_RS00510 (Ped0620_00515) | - | 103802..104368 (+) | 567 | WP_248912906.1 | sugar O-acetyltransferase | - |
| Ped0620_RS00515 (Ped0620_00520) | - | 104682..105833 (-) | 1152 | WP_248912907.1 | site-specific integrase | - |
| Ped0620_RS00520 (Ped0620_00525) | - | 106436..106744 (-) | 309 | WP_094104809.1 | hypothetical protein | - |
| Ped0620_RS00525 (Ped0620_00530) | - | 106933..107892 (-) | 960 | WP_094104808.1 | DUF3644 domain-containing protein | - |
| Ped0620_RS00530 (Ped0620_00535) | - | 107983..108516 (-) | 534 | WP_094104807.1 | PH domain-containing protein | - |
| Ped0620_RS00535 (Ped0620_00540) | - | 108584..108994 (-) | 411 | WP_002834416.1 | hypothetical protein | - |
| Ped0620_RS00540 (Ped0620_00545) | - | 108999..109334 (-) | 336 | WP_002834414.1 | helix-turn-helix transcriptional regulator | - |
| Ped0620_RS00545 (Ped0620_00550) | - | 109619..109807 (+) | 189 | WP_002834413.1 | transcriptional regulator | - |
| Ped0620_RS00550 (Ped0620_00555) | - | 110041..110745 (+) | 705 | WP_094104806.1 | Rha family transcriptional regulator | - |
| Ped0620_RS00555 (Ped0620_00560) | - | 110848..111120 (+) | 273 | WP_056979480.1 | hypothetical protein | - |
| Ped0620_RS00560 (Ped0620_00565) | - | 111283..111552 (+) | 270 | WP_094104805.1 | hypothetical protein | - |
| Ped0620_RS00565 (Ped0620_00570) | - | 111539..112318 (+) | 780 | WP_056979483.1 | bifunctional DNA primase/polymerase | - |
| Ped0620_RS00570 (Ped0620_00575) | - | 112315..113874 (+) | 1560 | WP_248912908.1 | DNA primase family protein | - |
| Ped0620_RS00575 (Ped0620_00580) | - | 114438..114653 (+) | 216 | WP_002834405.1 | hypothetical protein | - |
| Ped0620_RS00580 (Ped0620_00585) | - | 114634..115260 (+) | 627 | WP_151201399.1 | hypothetical protein | - |
| Ped0620_RS00585 (Ped0620_00590) | - | 115404..115829 (+) | 426 | WP_094104801.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| Ped0620_RS00590 (Ped0620_00595) | - | 115874..116059 (+) | 186 | WP_094104800.1 | hypothetical protein | - |
| Ped0620_RS00595 (Ped0620_00600) | - | 116056..116631 (+) | 576 | WP_248912909.1 | hypothetical protein | - |
| Ped0620_RS00600 (Ped0620_00605) | - | 117051..117263 (+) | 213 | Protein_120 | 1,4-beta-N-acetylmuramidase | - |
Sequence
Protein
Download Length: 724 a.a. Molecular weight: 81586.45 Da Isoelectric Point: 9.6542
>NTDB_id=618260 Ped0620_RS00450 WP_248912901.1 89955..92129(+) (comA/nlmT) [Pediococcus pentosaceus strain MGB0620]
MRSQKWQKFYTAQVDENDCGVAALNMVLKYYGSNYTLAHLRNLAKTTNDGTTALGIVEAAKHLNLNAEAVRTDIDFFSDF
QITFPVIVHVLKDNYLPHYYVVYQVTKTSLIIGDPDPTVNTTTISKARFIKEWTKIAIMITPNIKYKPTKEPRHTLINLV
PLLIKQKKLISLIISAAFLTTLISIAGTYFFQLIIDTYLPQMLNNTLTLVAIGLIAAYLFQAAISYIQSLLTIILGQRLM
VDIILKYVHHLFNLPMAFFATRHVGEITSRFSDASKIIDALGNIMMTLFLDMWILIAVGAFLAYKNIILFLISLIVIPIY
IIIVWIFKKTFHRLNQATMESSAIVNSAIIESLSGIETIKALTGESATKKKIDVLFCDLLRKNLAYQKADQGQQAIKMAT
KLILTVVILWIGTIFVMQHQLSLGQLLTYNALLLYFLTPLENIINLQSKLQSARVANNRLNEIYLVQSEFSKPRMINESY
QLNGDITVNNVNFKYGYSSNTLKNISLTIHRNQKVTIVGMSGSGKTTLAKLLIGFYEIQEQCGNIQINQHNINDISRKVL
RQYINYIPQEPFIFSGTVLDNLLLGSRPNLTQETIDQACSFAEIKADIEKLSQGYYTKLSESGSDLSGGQKQRLSIARAL
LYPAKCLIFDESTSSLDTITEHKIISNLMDMKGKTIIFIAHRLNIAAQTDKVIVLDKGTVVEQGSHQQLLNLNGYYTRLI
NRQG
MRSQKWQKFYTAQVDENDCGVAALNMVLKYYGSNYTLAHLRNLAKTTNDGTTALGIVEAAKHLNLNAEAVRTDIDFFSDF
QITFPVIVHVLKDNYLPHYYVVYQVTKTSLIIGDPDPTVNTTTISKARFIKEWTKIAIMITPNIKYKPTKEPRHTLINLV
PLLIKQKKLISLIISAAFLTTLISIAGTYFFQLIIDTYLPQMLNNTLTLVAIGLIAAYLFQAAISYIQSLLTIILGQRLM
VDIILKYVHHLFNLPMAFFATRHVGEITSRFSDASKIIDALGNIMMTLFLDMWILIAVGAFLAYKNIILFLISLIVIPIY
IIIVWIFKKTFHRLNQATMESSAIVNSAIIESLSGIETIKALTGESATKKKIDVLFCDLLRKNLAYQKADQGQQAIKMAT
KLILTVVILWIGTIFVMQHQLSLGQLLTYNALLLYFLTPLENIINLQSKLQSARVANNRLNEIYLVQSEFSKPRMINESY
QLNGDITVNNVNFKYGYSSNTLKNISLTIHRNQKVTIVGMSGSGKTTLAKLLIGFYEIQEQCGNIQINQHNINDISRKVL
RQYINYIPQEPFIFSGTVLDNLLLGSRPNLTQETIDQACSFAEIKADIEKLSQGYYTKLSESGSDLSGGQKQRLSIARAL
LYPAKCLIFDESTSSLDTITEHKIISNLMDMKGKTIIFIAHRLNIAAQTDKVIVLDKGTVVEQGSHQQLLNLNGYYTRLI
NRQG
Nucleotide
Download Length: 2175 bp
>NTDB_id=618260 Ped0620_RS00450 WP_248912901.1 89955..92129(+) (comA/nlmT) [Pediococcus pentosaceus strain MGB0620]
ATGCGGTCTCAAAAATGGCAAAAATTTTATACAGCTCAAGTTGATGAAAATGACTGCGGAGTGGCTGCGCTAAATATGGT
TCTTAAGTATTATGGTTCTAATTACACATTGGCACATTTACGTAATCTTGCTAAAACTACTAATGATGGCACCACGGCTC
TAGGCATTGTGGAAGCTGCGAAACACCTAAACTTAAACGCCGAAGCTGTGCGTACAGATATAGATTTTTTTTCTGATTTC
CAAATAACGTTTCCTGTTATCGTCCATGTTTTAAAAGATAACTATTTACCACACTATTATGTTGTTTATCAAGTCACTAA
GACAAGTTTAATTATTGGTGACCCTGATCCAACCGTTAATACTACTACAATATCAAAAGCTCGATTTATTAAAGAATGGA
CCAAAATTGCAATTATGATAACTCCAAATATTAAATATAAACCTACAAAAGAGCCACGACATACACTAATTAATTTAGTA
CCCTTGTTAATCAAACAAAAAAAATTGATTAGTTTAATTATCAGTGCGGCGTTTTTAACGACATTAATTAGTATTGCTGG
TACATATTTTTTTCAATTAATTATTGATACTTACCTACCTCAAATGTTAAACAATACTTTAACGTTAGTTGCTATCGGTC
TAATTGCAGCGTATCTTTTTCAAGCAGCTATTAGTTATATCCAAAGCTTACTCACAATTATATTGGGACAACGACTTATG
GTTGATATCATTCTGAAATATGTTCACCATCTTTTTAATTTACCTATGGCCTTTTTTGCTACTCGGCATGTAGGTGAAAT
AACATCGCGATTTTCTGATGCTAGTAAAATTATTGATGCGCTTGGAAACATTATGATGACGTTATTTTTGGATATGTGGA
TTTTAATTGCAGTAGGTGCCTTTTTAGCTTATAAAAATATTATTTTATTTTTAATTTCATTGATTGTAATTCCAATATAT
ATAATAATCGTTTGGATATTTAAAAAAACTTTCCATCGGTTAAATCAAGCCACAATGGAAAGTAGTGCTATCGTTAACTC
AGCTATTATTGAAAGTTTAAGTGGTATAGAAACCATCAAGGCTTTGACAGGTGAATCAGCCACAAAAAAGAAGATTGACG
TTCTTTTTTGTGATTTATTACGAAAAAATTTAGCTTATCAAAAGGCTGATCAAGGACAACAAGCTATTAAAATGGCTACT
AAATTGATTTTGACTGTTGTTATCCTCTGGATAGGTACAATTTTTGTAATGCAACATCAACTTTCTTTAGGGCAACTGTT
AACCTACAATGCGTTACTTTTGTACTTTCTAACACCGTTAGAAAATATAATTAATTTACAATCTAAATTACAATCAGCAC
GAGTAGCAAATAACCGATTAAATGAGATTTATCTTGTTCAGTCTGAATTTTCAAAACCAAGGATGATTAATGAATCCTAT
CAATTGAATGGTGATATTACGGTCAATAATGTTAATTTTAAATACGGATATAGTTCTAATACGCTTAAAAATATTTCTTT
AACAATTCATCGTAATCAAAAAGTTACGATCGTAGGTATGAGTGGATCTGGTAAAACAACTCTTGCTAAATTATTAATTG
GTTTTTACGAGATCCAAGAACAATGTGGTAACATTCAAATTAATCAGCATAATATAAATGATATTAGTCGTAAGGTTCTA
CGGCAGTACATCAATTATATCCCTCAGGAACCCTTTATTTTTTCTGGTACCGTTTTAGACAACTTATTATTGGGTAGTCG
GCCTAATTTAACCCAAGAAACGATTGATCAAGCTTGTTCTTTTGCTGAAATTAAAGCGGACATTGAAAAATTATCTCAAG
GCTACTACACTAAATTAAGCGAAAGTGGTTCTGATTTATCCGGTGGACAAAAACAACGGTTATCAATAGCTCGTGCATTA
TTGTATCCAGCAAAGTGTCTAATTTTTGACGAATCGACTAGTAGCTTAGACACAATTACTGAACACAAGATTATATCTAA
TTTGATGGATATGAAGGGTAAAACAATAATTTTTATTGCTCATCGTCTTAACATTGCAGCTCAAACTGATAAAGTCATTG
TACTTGATAAAGGGACGGTTGTTGAGCAAGGCTCTCACCAACAACTATTAAATCTTAACGGTTATTACACAAGATTAATT
AACAGACAAGGATAG
ATGCGGTCTCAAAAATGGCAAAAATTTTATACAGCTCAAGTTGATGAAAATGACTGCGGAGTGGCTGCGCTAAATATGGT
TCTTAAGTATTATGGTTCTAATTACACATTGGCACATTTACGTAATCTTGCTAAAACTACTAATGATGGCACCACGGCTC
TAGGCATTGTGGAAGCTGCGAAACACCTAAACTTAAACGCCGAAGCTGTGCGTACAGATATAGATTTTTTTTCTGATTTC
CAAATAACGTTTCCTGTTATCGTCCATGTTTTAAAAGATAACTATTTACCACACTATTATGTTGTTTATCAAGTCACTAA
GACAAGTTTAATTATTGGTGACCCTGATCCAACCGTTAATACTACTACAATATCAAAAGCTCGATTTATTAAAGAATGGA
CCAAAATTGCAATTATGATAACTCCAAATATTAAATATAAACCTACAAAAGAGCCACGACATACACTAATTAATTTAGTA
CCCTTGTTAATCAAACAAAAAAAATTGATTAGTTTAATTATCAGTGCGGCGTTTTTAACGACATTAATTAGTATTGCTGG
TACATATTTTTTTCAATTAATTATTGATACTTACCTACCTCAAATGTTAAACAATACTTTAACGTTAGTTGCTATCGGTC
TAATTGCAGCGTATCTTTTTCAAGCAGCTATTAGTTATATCCAAAGCTTACTCACAATTATATTGGGACAACGACTTATG
GTTGATATCATTCTGAAATATGTTCACCATCTTTTTAATTTACCTATGGCCTTTTTTGCTACTCGGCATGTAGGTGAAAT
AACATCGCGATTTTCTGATGCTAGTAAAATTATTGATGCGCTTGGAAACATTATGATGACGTTATTTTTGGATATGTGGA
TTTTAATTGCAGTAGGTGCCTTTTTAGCTTATAAAAATATTATTTTATTTTTAATTTCATTGATTGTAATTCCAATATAT
ATAATAATCGTTTGGATATTTAAAAAAACTTTCCATCGGTTAAATCAAGCCACAATGGAAAGTAGTGCTATCGTTAACTC
AGCTATTATTGAAAGTTTAAGTGGTATAGAAACCATCAAGGCTTTGACAGGTGAATCAGCCACAAAAAAGAAGATTGACG
TTCTTTTTTGTGATTTATTACGAAAAAATTTAGCTTATCAAAAGGCTGATCAAGGACAACAAGCTATTAAAATGGCTACT
AAATTGATTTTGACTGTTGTTATCCTCTGGATAGGTACAATTTTTGTAATGCAACATCAACTTTCTTTAGGGCAACTGTT
AACCTACAATGCGTTACTTTTGTACTTTCTAACACCGTTAGAAAATATAATTAATTTACAATCTAAATTACAATCAGCAC
GAGTAGCAAATAACCGATTAAATGAGATTTATCTTGTTCAGTCTGAATTTTCAAAACCAAGGATGATTAATGAATCCTAT
CAATTGAATGGTGATATTACGGTCAATAATGTTAATTTTAAATACGGATATAGTTCTAATACGCTTAAAAATATTTCTTT
AACAATTCATCGTAATCAAAAAGTTACGATCGTAGGTATGAGTGGATCTGGTAAAACAACTCTTGCTAAATTATTAATTG
GTTTTTACGAGATCCAAGAACAATGTGGTAACATTCAAATTAATCAGCATAATATAAATGATATTAGTCGTAAGGTTCTA
CGGCAGTACATCAATTATATCCCTCAGGAACCCTTTATTTTTTCTGGTACCGTTTTAGACAACTTATTATTGGGTAGTCG
GCCTAATTTAACCCAAGAAACGATTGATCAAGCTTGTTCTTTTGCTGAAATTAAAGCGGACATTGAAAAATTATCTCAAG
GCTACTACACTAAATTAAGCGAAAGTGGTTCTGATTTATCCGGTGGACAAAAACAACGGTTATCAATAGCTCGTGCATTA
TTGTATCCAGCAAAGTGTCTAATTTTTGACGAATCGACTAGTAGCTTAGACACAATTACTGAACACAAGATTATATCTAA
TTTGATGGATATGAAGGGTAAAACAATAATTTTTATTGCTCATCGTCTTAACATTGCAGCTCAAACTGATAAAGTCATTG
TACTTGATAAAGGGACGGTTGTTGAGCAAGGCTCTCACCAACAACTATTAAATCTTAACGGTTATTACACAAGATTAATT
AACAGACAAGGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comA/nlmT | Streptococcus mutans UA159 |
51.253 |
99.171 |
0.508 |
| comA | Streptococcus gordonii str. Challis substr. CH1 |
50.49 |
98.757 |
0.499 |
| comA | Streptococcus mitis NCTC 12261 |
49.93 |
98.757 |
0.493 |
| comA | Streptococcus pneumoniae R6 |
49.371 |
98.757 |
0.488 |
| comA | Streptococcus pneumoniae Rx1 |
49.371 |
98.757 |
0.488 |
| comA | Streptococcus pneumoniae TIGR4 |
49.371 |
98.757 |
0.488 |
| comA | Streptococcus pneumoniae D39 |
49.371 |
98.757 |
0.488 |
| comA | Streptococcus mitis SK321 |
49.231 |
98.757 |
0.486 |