Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIT34_RS27105 Genome accession   NZ_CP085431
Coordinates   5226179..5226679 (-) Length   166 a.a.
NCBI ID   WP_013059914.1    Uniprot ID   A0A0B6A5N1
Organism   Priestia megaterium strain F20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5221179..5231679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT34_RS27085 (LIT34_27115) rplI 5222334..5222783 (-) 450 WP_013059910.1 50S ribosomal protein L9 -
  LIT34_RS27090 (LIT34_27120) - 5222780..5224753 (-) 1974 WP_013059911.1 DHH family phosphoesterase -
  LIT34_RS27095 (LIT34_27125) - 5224790..5225734 (-) 945 WP_013059912.1 YybS family protein -
  LIT34_RS27100 (LIT34_27130) rpsR 5225873..5226112 (-) 240 WP_013059913.1 30S ribosomal protein S18 -
  LIT34_RS27105 (LIT34_27135) ssbA 5226179..5226679 (-) 501 WP_013059914.1 single-stranded DNA-binding protein Machinery gene
  LIT34_RS27110 (LIT34_27140) rpsF 5226728..5227015 (-) 288 WP_013059915.1 30S ribosomal protein S6 -
  LIT34_RS27115 (LIT34_27145) ychF 5227205..5228305 (-) 1101 WP_013059916.1 redox-regulated ATPase YchF -
  LIT34_RS27120 (LIT34_27150) - 5228476..5228673 (-) 198 WP_013059917.1 DUF951 domain-containing protein -
  LIT34_RS27125 (LIT34_27155) - 5228688..5229581 (-) 894 WP_029319512.1 mechanosensitive ion channel family protein -
  LIT34_RS27130 (LIT34_27160) - 5229649..5230662 (-) 1014 WP_013059919.1 membrane protein -
  LIT34_RS27135 (LIT34_27165) yyaC 5230749..5231369 (+) 621 WP_013059920.1 spore protease YyaC -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18132.76 Da        Isoelectric Point: 4.6529

>NTDB_id=618115 LIT34_RS27105 WP_013059914.1 5226179..5226679(-) (ssbA) [Priestia megaterium strain F20]
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=618115 LIT34_RS27105 WP_013059914.1 5226179..5226679(-) (ssbA) [Priestia megaterium strain F20]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCCAATTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGACGGTCGTCGTGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAATTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCT
GATGACGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6A5N1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.765
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.608
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Vibrio cholerae strain A1552

33.889

100

0.367
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367