Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LIT30_RS25790 Genome accession   NZ_CP085426
Coordinates   4933820..4934182 (-) Length   120 a.a.
NCBI ID   WP_013059785.1    Uniprot ID   -
Organism   Priestia megaterium strain F16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4928820..4939182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT30_RS25780 (LIT30_25790) - 4929308..4931938 (+) 2631 WP_013059783.1 DEAD/DEAH box helicase -
  LIT30_RS25785 (LIT30_25795) - 4932236..4933282 (+) 1047 WP_063670706.1 C40 family peptidase -
  LIT30_RS25790 (LIT30_25800) ssbB 4933820..4934182 (-) 363 WP_013059785.1 single-stranded DNA-binding protein Machinery gene
  LIT30_RS25795 (LIT30_25805) - 4934279..4934716 (+) 438 WP_014457773.1 YwpF-like family protein -
  LIT30_RS25800 (LIT30_25810) - 4935240..4935662 (+) 423 WP_013059787.1 helix-turn-helix transcriptional regulator -
  LIT30_RS25805 (LIT30_25815) fabZ 4935691..4936125 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LIT30_RS25810 (LIT30_25820) - 4936209..4937030 (-) 822 WP_013059789.1 flagellar hook-basal body protein -
  LIT30_RS25815 (LIT30_25825) - 4937054..4937878 (-) 825 WP_013059790.1 flagellar hook-basal body protein -
  LIT30_RS25820 (LIT30_25830) - 4937993..4938994 (-) 1002 WP_013059791.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13486.22 Da        Isoelectric Point: 7.1647

>NTDB_id=618052 LIT30_RS25790 WP_013059785.1 4933820..4934182(-) (ssbB) [Priestia megaterium strain F16]
MINHIILVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=618052 LIT30_RS25790 WP_013059785.1 4933820..4934182(-) (ssbB) [Priestia megaterium strain F16]
ATGATTAACCATATTATTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAAAGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

88.333

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

88.333

0.458
  ssbB/cilA Streptococcus mitis NCTC 12261

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.509

88.333

0.367