Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GDK21_RS06685 Genome accession   NZ_AP019542
Coordinates   1358389..1359012 (-) Length   207 a.a.
NCBI ID   WP_001208755.1    Uniprot ID   P65819
Organism   Staphylococcus aureus strain KG-03     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1353389..1364012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK21_RS06660 (SAKG03_12470) rpmG 1354965..1355114 (+) 150 WP_001265708.1 50S ribosomal protein L33 -
  GDK21_RS06665 (SAKG03_12480) rpsN 1355568..1355837 (+) 270 WP_001085655.1 30S ribosomal protein S14 -
  GDK21_RS06670 (SAKG03_12490) guaC 1355994..1356971 (+) 978 WP_000688122.1 GMP reductase -
  GDK21_RS06680 (SAKG03_12500) - 1356993..1358009 (+) 1017 WP_001797872.1 CAP domain-containing protein -
  GDK21_RS06685 (SAKG03_12510) dinR/lexA 1358389..1359012 (-) 624 WP_001208755.1 transcriptional repressor LexA Regulator
  GDK21_RS06690 (SAKG03_12520) sosA 1359155..1359388 (+) 234 WP_000499650.1 DNA damage-induced cell division inhibitor SosA -
  GDK21_RS06695 (SAKG03_12530) - 1359525..1359764 (+) 240 WP_000071351.1 DUF896 domain-containing protein -
  GDK21_RS06700 (SAKG03_12540) recP/tkt 1359885..1361873 (+) 1989 WP_000481443.1 transketolase Machinery gene
  GDK21_RS06705 (SAKG03_12550) - 1362151..1362393 (+) 243 WP_000246909.1 YneF family protein -
  GDK21_RS06710 - 1362380..1362478 (+) 99 WP_001789897.1 hypothetical protein -
  GDK21_RS06715 (SAKG03_12560) - 1362572..1363039 (+) 468 WP_000966142.1 CcdC family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23331.55 Da        Isoelectric Point: 4.8811

>NTDB_id=61793 GDK21_RS06685 WP_001208755.1 1358389..1359012(-) (dinR/lexA) [Staphylococcus aureus strain KG-03]
MRELTKRQSEIYNYIKQVVQMKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDPTKPRAIEIVSDQTNDNINME
ETIHVPVIGKVTAGVPITAVENIEEYFPLPEHLTSTHNSDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAMT
EEDEATVKRFYKEKNRYRLQPENSTMEPIYLDNVAVIGKVIGLYREM

Nucleotide


Download         Length: 624 bp        

>NTDB_id=61793 GDK21_RS06685 WP_001208755.1 1358389..1359012(-) (dinR/lexA) [Staphylococcus aureus strain KG-03]
ATGAGAGAATTAACAAAACGACAAAGCGAAATATATAACTATATTAAACAAGTTGTTCAAATGAAAGGTTATCCGCCTAG
TGTTCGCGAAATTGGTGAAGCAGTTGGCTTAGCATCCAGTTCAACTGTTCATGGTCATCTTTCACGTCTTGAAGAAAAAG
GATATATAAGAAGAGATCCAACGAAACCACGTGCTATAGAAATTGTAAGTGATCAAACAAATGATAATATTAATATGGAA
GAAACGATTCATGTGCCAGTTATTGGTAAAGTCACAGCAGGTGTTCCTATTACCGCTGTAGAAAATATTGAAGAGTATTT
TCCATTACCTGAACACTTAACATCGACACATAATAGCGACATATTCATATTAAACGTCGTAGGCGACAGTATGATTGAGG
CTGGTATATTAGACGGAGACAAAGTAATTGTTCGCAGTCAAACCATAGCAGAAAATGGAGACATTATTGTTGCTATGACT
GAGGAAGATGAAGCAACTGTCAAACGCTTCTATAAAGAAAAAAATCGTTATCGATTACAACCTGAAAATAGTACAATGGA
GCCAATTTACCTCGACAATGTTGCTGTAATTGGGAAAGTAATTGGTTTGTACCGCGAAATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(86-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65819

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

66.341

99.034

0.657

Multiple sequence alignment