Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   NUW85_RS18180 Genome accession   NZ_CP102603
Coordinates   3691578..3692582 (+) Length   334 a.a.
NCBI ID   WP_003152685.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3686578..3697582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS18155 (NUW85_18160) nadA 3686756..3687859 (+) 1104 WP_072588434.1 quinolinate synthase NadA -
  NUW85_RS18160 (NUW85_18165) safA 3687986..3689191 (+) 1206 WP_139885336.1 spore coat assembly protein SafA -
  NUW85_RS18165 (NUW85_18170) - 3689340..3689933 (+) 594 WP_139885335.1 YhcN/YlaJ family sporulation lipoprotein -
  NUW85_RS18170 (NUW85_18175) - 3690318..3690827 (+) 510 WP_012118093.1 intercompartmental signaling factor BofC -
  NUW85_RS18175 (NUW85_18180) ruvA 3690962..3691567 (+) 606 WP_003152683.1 Holliday junction branch migration protein RuvA Machinery gene
  NUW85_RS18180 (NUW85_18185) ruvB 3691578..3692582 (+) 1005 WP_003152685.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NUW85_RS18185 (NUW85_18190) - 3692575..3692775 (+) 201 WP_003152687.1 DUF2905 domain-containing protein -
  NUW85_RS18190 (NUW85_18195) queA 3692801..3693829 (+) 1029 WP_003152692.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  NUW85_RS18195 (NUW85_18200) tgt 3693857..3695002 (+) 1146 WP_014305500.1 tRNA guanosine(34) transglycosylase Tgt -
  NUW85_RS18200 (NUW85_18205) yajC 3695033..3695293 (+) 261 WP_003152695.1 preprotein translocase subunit YajC -
  NUW85_RS18205 (NUW85_18210) - 3695345..3695731 (-) 387 WP_003152697.1 TIGR04086 family membrane protein -
  NUW85_RS18210 (NUW85_18215) - 3695898..3696554 (+) 657 WP_003152699.1 DUF421 domain-containing protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37225.52 Da        Isoelectric Point: 4.7767

>NTDB_id=617496 NUW85_RS18180 WP_003152685.1 3691578..3692582(+) (ruvB) [Bacillus amyloliquefaciens strain MBLB0692]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPARD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=617496 NUW85_RS18180 WP_003152685.1 3691578..3692582(+) (ruvB) [Bacillus amyloliquefaciens strain MBLB0692]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTGG
ACCACGTTCTTTTATATGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTAACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCGATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCGACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTGGATATCGAAGAAGCTCCGGCTCTGGAGATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGGGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCATATCGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTCCAGAGGACGCCGAGGGGACGGGTCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

91.916

100

0.919
  ruvB Streptococcus pneumoniae TIGR4

60.736

97.605

0.593
  ruvB Streptococcus pneumoniae R6

60.736

97.605

0.593
  ruvB Streptococcus pneumoniae D39

60.736

97.605

0.593
  ruvB Synechocystis sp. PCC 6803

58.359

98.503

0.575
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518