NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	NUW85_RS18175	Genome accession	NZ_CP102603
Coordinates	3690962..3691567 (+)	Length	201 a.a.
NCBI ID	WP_003152683.1	Uniprot ID	A7Z769
Organism	Bacillus amyloliquefaciens strain MBLB0692
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3685962..3696567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NUW85_RS18155 (NUW85_18160)	nadA	3686756..3687859 (+)	1104	WP_072588434.1	quinolinate synthase NadA	-
NUW85_RS18160 (NUW85_18165)	safA	3687986..3689191 (+)	1206	WP_139885336.1	spore coat assembly protein SafA	-
NUW85_RS18165 (NUW85_18170)	-	3689340..3689933 (+)	594	WP_139885335.1	YhcN/YlaJ family sporulation lipoprotein	-
NUW85_RS18170 (NUW85_18175)	-	3690318..3690827 (+)	510	WP_012118093.1	intercompartmental signaling factor BofC	-
NUW85_RS18175 (NUW85_18180)	ruvA	3690962..3691567 (+)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
NUW85_RS18180 (NUW85_18185)	ruvB	3691578..3692582 (+)	1005	WP_003152685.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
NUW85_RS18185 (NUW85_18190)	-	3692575..3692775 (+)	201	WP_003152687.1	DUF2905 domain-containing protein	-
NUW85_RS18190 (NUW85_18195)	queA	3692801..3693829 (+)	1029	WP_003152692.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
NUW85_RS18195 (NUW85_18200)	tgt	3693857..3695002 (+)	1146	WP_014305500.1	tRNA guanosine(34) transglycosylase Tgt	-
NUW85_RS18200 (NUW85_18205)	yajC	3695033..3695293 (+)	261	WP_003152695.1	preprotein translocase subunit YajC	-
NUW85_RS18205 (NUW85_18210)	-	3695345..3695731 (-)	387	WP_003152697.1	TIGR04086 family membrane protein	-
NUW85_RS18210 (NUW85_18215)	-	3695898..3696554 (+)	657	WP_003152699.1	DUF421 domain-containing protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22414.85 Da Isoelectric Point: 5.1597

                                >NTDB_id=617495 NUW85_RS18175 WP_003152683.1 3690962..3691567(+) (ruvA) [Bacillus amyloliquefaciens strain MBLB0692]

MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL

EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=617495 NUW85_RS18175 WP_003152683.1 3690962..3691567(+) (ruvA) [Bacillus amyloliquefaciens strain MBLB0692]

GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA

GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG

CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCG

AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGACCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT

GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC

CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT

GAAGCGCTTAGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC

AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A7Z769

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408

Detailed information NTG0617495