Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LIT38_RS05860 Genome accession   NZ_CP085394
Coordinates   1121846..1122649 (+) Length   267 a.a.
NCBI ID   WP_243507694.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116846..1127649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS05830 (LIT38_05845) - 1117689..1118354 (-) 666 WP_243507688.1 VWA domain-containing protein -
  LIT38_RS05835 (LIT38_05850) - 1118426..1119487 (-) 1062 WP_243507690.1 M20/M25/M40 family metallo-hydrolase -
  LIT38_RS05840 (LIT38_05855) - 1119797..1120300 (+) 504 WP_252217362.1 DoxX family protein -
  LIT38_RS05845 (LIT38_05860) - 1120355..1120543 (-) 189 WP_206842545.1 YfhD family protein -
  LIT38_RS05850 (LIT38_05865) - 1120636..1120761 (-) 126 WP_081757217.1 YfhE family protein -
  LIT38_RS05855 (LIT38_05870) - 1120835..1121740 (-) 906 WP_252217363.1 TIGR01777 family oxidoreductase -
  LIT38_RS05860 (LIT38_05875) recX 1121846..1122649 (+) 804 WP_243507694.1 recombination regulator RecX Regulator
  LIT38_RS05865 (LIT38_05880) - 1122668..1123339 (-) 672 WP_243507696.1 SDR family oxidoreductase -
  LIT38_RS05870 (LIT38_05885) - 1123543..1123872 (+) 330 WP_243507698.1 YfhH family protein -
  LIT38_RS05875 (LIT38_05890) - 1123896..1124054 (-) 159 WP_009335831.1 YpzG family protein -
  LIT38_RS05880 (LIT38_05895) - 1124075..1124245 (-) 171 WP_009335832.1 small, acid-soluble spore protein K -
  LIT38_RS05885 (LIT38_05900) - 1124374..1124643 (+) 270 WP_243507700.1 YfhJ family protein -
  LIT38_RS05890 (LIT38_05905) - 1124677..1125657 (-) 981 WP_243507702.1 metal-dependent hydrolase -
  LIT38_RS05895 (LIT38_05910) mutY 1125903..1127003 (+) 1101 WP_243507704.1 A/G-specific adenine glycosylase -
  LIT38_RS05900 (LIT38_05915) - 1127036..1127260 (-) 225 WP_019383506.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31875.24 Da        Isoelectric Point: 5.3850

>NTDB_id=617495 LIT38_RS05860 WP_243507694.1 1121846..1122649(+) (recX) [Bacillus sp. CMF12]
MPIITKITFQKKNTDRYNIYMDYGKGEEYAFSVDEDVLIKHQLKKGMELDEFSLNEIGYQDDIRKSYNMAIHYLSRRMRS
ETEVRKHLAEKEVEEPVIQEVVHKLYDYKFLNDEEYAIAFVRTQMNTSDKGKGLIRTELKEKGISPELIEEALKEYPWEA
ELSTAKRLCEKHSQKYARDSSKILKQKLEQMLMRKGFNFDIIQEAVSETEIEKEEDEEFAALKYQAEKAKRKYANLPEFE
YRQKMKQALFRKGFSFNLIDQYLNDEE

Nucleotide


Download         Length: 804 bp        

>NTDB_id=617495 LIT38_RS05860 WP_243507694.1 1121846..1122649(+) (recX) [Bacillus sp. CMF12]
ATGCCGATCATTACGAAAATCACATTTCAGAAAAAAAACACAGACCGCTACAATATATATATGGATTATGGGAAAGGTGA
AGAATATGCATTTAGTGTGGATGAAGATGTGTTAATAAAACATCAGCTCAAAAAAGGAATGGAGCTGGATGAATTTTCAC
TTAATGAAATTGGCTACCAGGATGATATCCGAAAATCCTATAATATGGCTATTCATTATTTATCCAGAAGGATGCGCTCA
GAAACCGAAGTCCGCAAACATTTAGCGGAAAAGGAAGTTGAAGAACCGGTTATTCAGGAAGTTGTCCACAAATTGTACGA
TTACAAATTTTTAAATGATGAAGAATATGCAATAGCATTTGTGCGTACACAAATGAACACATCAGATAAAGGGAAAGGAT
TAATCCGCACTGAACTAAAAGAGAAAGGGATTTCCCCTGAATTAATCGAAGAAGCGCTGAAGGAGTATCCATGGGAAGCT
GAATTAAGTACAGCAAAAAGGCTGTGTGAAAAGCATTCACAGAAATATGCCCGTGATTCATCAAAGATCCTCAAACAAAA
ACTGGAACAGATGTTAATGCGCAAAGGTTTTAATTTTGACATCATTCAAGAAGCAGTATCTGAAACGGAGATTGAAAAAG
AAGAAGATGAAGAATTTGCAGCCCTAAAGTACCAGGCGGAAAAAGCCAAGAGGAAATATGCAAACCTTCCTGAATTCGAA
TACAGGCAAAAAATGAAACAAGCCTTATTCAGAAAGGGCTTTTCGTTCAATTTAATTGATCAATATTTAAATGATGAAGA
ATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

49.064

100

0.491