Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NUU08_RS08490 Genome accession   NZ_CP102522
Coordinates   1678793..1680769 (-) Length   658 a.a.
NCBI ID   WP_058221448.1    Uniprot ID   -
Organism   Lactococcus lactis strain R-707-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1673793..1685769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU08_RS08465 (NUU08_08455) dapA 1674338..1675231 (-) 894 WP_003129414.1 4-hydroxy-tetrahydrodipicolinate synthase -
  NUU08_RS08470 (NUU08_08460) - 1675572..1676027 (-) 456 WP_003129415.1 NUDIX hydrolase -
  NUU08_RS08475 (NUU08_08465) - 1676038..1677114 (-) 1077 WP_003129416.1 aspartate-semialdehyde dehydrogenase -
  NUU08_RS08480 (NUU08_08470) - 1677209..1678072 (-) 864 WP_003129417.1 MIP/aquaporin family protein -
  NUU08_RS08485 (NUU08_08475) - 1678444..1678698 (-) 255 WP_003129418.1 hypothetical protein -
  NUU08_RS08490 (NUU08_08480) recP/tkt 1678793..1680769 (-) 1977 WP_058221448.1 transketolase Machinery gene
  NUU08_RS08495 (NUU08_08485) - 1681000..1681641 (-) 642 WP_003129420.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -
  NUU08_RS08500 (NUU08_08490) - 1681644..1682594 (-) 951 WP_058221449.1 sugar kinase -
  NUU08_RS08505 (NUU08_08495) uxaC 1682591..1684009 (-) 1419 WP_010906065.1 glucuronate isomerase -
  NUU08_RS08510 (NUU08_08500) - 1684006..1684899 (-) 894 WP_003129425.1 aldose 1-epimerase family protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71626.73 Da        Isoelectric Point: 4.7642

>NTDB_id=617019 NUU08_RS08490 WP_058221448.1 1678793..1680769(-) (recP/tkt) [Lactococcus lactis strain R-707-1]
MFDTTDQLAVNTIRTLSLDAIQKANSGHPGLPMGSAPMAYVLWSKFLNVNPKTSRKWSNRDRFVLSAGHGSAMLYSLLHL
AGYNVTTDDLKGFRQWQSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAQYNKPGFDIVDHYTYALNGDGD
LMEGVSQEAASLAGKLKLGKLILFYDSNNISLDGDLSMSFIDDIQKRFESYGWQHLLVKDGNDLEEIAAAVEVAKAEKSK
PTIIEVKTVIGFGAEKQGTSAVHGAPLGAEGVAFAKKAYGWDYPEFTVPEEVSKRFLETTVARGEAMEQVWRSTFDDYSE
KYPELAEQYAKAFENETPELTLTKHEMETSKASRVTSQEAIQELSAQMPNLWGGSADLSASNNTMVKVEEDFMPDNYAGR
NIWFGVREFAMGAIMNGIALHGGTRVYGGTFFVFSNYMLPSVRMAALQSLPVTYVWTHDSIAVGEDGPTHEPVEQLASVR
SIPNLDVIRPADGNEVVAAWRRAASSKSGPTALILTRQNLPVLPDTYELAEEGLNRGAYILSKEEGKLEGIIIATGSEVA
LALEAKKTLGSGIRVVSMPSMNIFDEQEAAYREEILPKDVRRRLAIEAGTSYGWGKYVGLDGATVTVDTWGASAPANIVL
PAYGFTAENVVKAYKELD

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=617019 NUU08_RS08490 WP_058221448.1 1678793..1680769(-) (recP/tkt) [Lactococcus lactis strain R-707-1]
ATGTTTGATACTACTGATCAATTGGCTGTAAATACGATTCGTACTCTATCATTAGATGCGATTCAAAAAGCAAATTCAGG
ACATCCTGGACTTCCAATGGGCTCTGCACCAATGGCTTATGTACTTTGGAGCAAATTTCTTAATGTGAACCCTAAGACAA
GTCGTAAATGGTCAAATCGTGACCGTTTTGTCTTGTCTGCTGGTCATGGTTCTGCAATGTTATATAGTTTATTACATTTG
GCAGGTTATAATGTAACGACTGATGATTTAAAAGGTTTCCGTCAATGGCAATCAAAAACACCGGGACATCCAGAAGTTAA
TCATACAGATGGTGTTGAAGCAACAACAGGTCCTTTAGGACAAGGAATTGCCAATGCTGTCGGAATGGCAATGGCTGAAG
CACATTTAGCAGCACAATACAATAAACCTGGTTTTGATATTGTTGACCATTACACTTACGCCTTAAATGGTGATGGTGAT
TTGATGGAAGGTGTTTCACAAGAAGCAGCTTCACTTGCAGGTAAATTGAAACTTGGTAAATTGATTCTTTTCTATGATTC
AAATAATATTTCTCTAGATGGTGACTTATCTATGTCATTTATTGATGATATTCAAAAACGTTTTGAATCATATGGCTGGC
AACATTTATTGGTAAAAGATGGAAATGATTTAGAAGAAATCGCAGCAGCTGTTGAAGTGGCTAAAGCTGAAAAATCTAAA
CCAACAATCATTGAAGTTAAAACAGTCATTGGTTTTGGTGCTGAAAAACAAGGAACTTCAGCAGTTCACGGAGCTCCTCT
TGGAGCTGAAGGTGTTGCATTTGCCAAGAAAGCATATGGTTGGGATTATCCTGAATTTACAGTTCCTGAAGAAGTATCAA
AACGCTTTTTAGAAACGACAGTTGCGCGTGGTGAAGCGATGGAGCAAGTATGGCGCAGTACTTTTGATGATTATTCTGAA
AAATACCCTGAGCTTGCTGAGCAATACGCAAAAGCTTTTGAAAATGAAACGCCAGAGCTTACTTTGACCAAGCATGAAAT
GGAAACAAGCAAGGCCAGCCGTGTAACTTCACAAGAAGCTATCCAAGAATTATCAGCTCAAATGCCAAATCTTTGGGGTG
GGTCTGCTGACCTTTCGGCTTCAAATAATACAATGGTTAAAGTTGAAGAAGACTTCATGCCAGATAACTATGCTGGACGT
AATATTTGGTTTGGTGTACGTGAATTTGCAATGGGAGCCATTATGAATGGGATTGCTTTGCATGGTGGAACTCGTGTCTA
TGGCGGAACATTCTTCGTCTTCTCAAACTACATGCTTCCTTCTGTTCGGATGGCTGCTCTACAAAGCTTACCAGTTACTT
ATGTTTGGACACATGATTCCATTGCTGTTGGGGAAGATGGTCCAACTCACGAACCTGTTGAACAATTAGCTTCTGTTCGC
TCAATTCCTAATTTGGATGTAATTCGTCCAGCTGATGGAAATGAAGTAGTGGCTGCATGGCGTCGTGCTGCATCAAGTAA
AAGCGGCCCAACCGCACTTATTTTGACTCGTCAAAATCTTCCAGTTTTACCTGATACTTATGAATTGGCTGAAGAAGGTC
TGAATCGTGGGGCTTATATTCTTTCAAAAGAAGAAGGAAAACTTGAAGGAATCATCATTGCGACTGGTTCAGAAGTAGCA
TTAGCTCTTGAAGCTAAGAAGACTTTGGGTTCTGGCATTCGTGTCGTTTCAATGCCTTCAATGAATATTTTTGACGAACA
AGAAGCAGCTTATCGCGAAGAAATTTTACCAAAAGATGTAAGACGTCGTTTAGCGATTGAAGCTGGTACAAGTTACGGAT
GGGGTAAATATGTTGGACTTGATGGTGCAACAGTTACAGTAGATACTTGGGGCGCTTCGGCACCAGCAAATATCGTTCTT
CCAGCTTACGGATTTACTGCTGAAAATGTAGTTAAAGCATACAAAGAGCTTGACTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-521)

Transketolase, C-terminal domain (Transketolase_C)

(551-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.255

100

0.559