Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   SANR_RS03015 Genome accession   NC_022239
Coordinates   590391..591422 (+) Length   343 a.a.
NCBI ID   WP_003037510.1    Uniprot ID   I0SBF6
Organism   Streptococcus anginosus C238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 585391..596422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS02990 - 585464..585778 (+) 315 WP_003037418.1 PTS cellobiose transporter subunit IIB -
  SANR_RS02995 (SANR_0586) - 585834..587825 (+) 1992 WP_020999517.1 BglG family transcription antiterminator -
  SANR_RS03000 (SANR_0587) - 587838..588155 (+) 318 WP_003037503.1 PTS cellobiose transporter subunit IIA -
  SANR_RS03005 (SANR_0588) - 588179..588685 (+) 507 WP_041791070.1 hypothetical protein -
  SANR_RS03010 (SANR_0589) celB 588725..590068 (+) 1344 WP_003037415.1 PTS cellobiose transporter subunit IIC -
  SANR_RS03015 (SANR_0590) coiA 590391..591422 (+) 1032 WP_003037510.1 competence protein CoiA Machinery gene
  SANR_RS03020 (SANR_0591) pepF 591374..593176 (+) 1803 WP_003037368.1 oligoendopeptidase F Regulator
  SANR_RS03025 (SANR_0592) - 593178..593861 (+) 684 WP_003037234.1 O-methyltransferase -
  SANR_RS03030 (SANR_0593) prsA 593968..594906 (+) 939 WP_003037344.1 peptidylprolyl isomerase PrsA -
  SANR_RS03035 (SANR_0594) - 595044..595613 (+) 570 WP_080553209.1 LURP-one-related/scramblase family protein -

Sequence


Protein


Download         Length: 343 a.a.        Molecular weight: 40832.11 Da        Isoelectric Point: 9.2445

>NTDB_id=61664 SANR_RS03015 WP_003037510.1 590391..591422(+) (coiA) [Streptococcus anginosus C238]
MLMACQENGKILNAVEDTVNPLDRFLCPSCKEAVRFKNGKVMRPHFAHISLKECHFYTENESAEHLNLKAVLFTWARKSN
HAIQVEAYLPELQQIADLLVEKQIVLEVQCSSLSQKRLKERTESYRQHGYRVLWLLGKKLWLKNTLTNLQKDFLYFSQNM
GFHMWELDEQKQLLRLKYLIHEDLHGKVQYKEKSFAFGKGNLLDIFRQPFCKQEMTSFLAKEDKNICSYVRQQLYYQQPK
WMKWQAELYQTGDNLLTKTASDFYPQVQPVRSSSFCQIFQDLTPYYQQFSAYYEKEKNKNLQILYPPAFYAKIFGNIYDR
IGRTEEILWQNKEMKLKKNTLGT

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=61664 SANR_RS03015 WP_003037510.1 590391..591422(+) (coiA) [Streptococcus anginosus C238]
ATGTTAATGGCTTGTCAGGAAAACGGAAAAATACTAAATGCTGTGGAAGATACGGTAAATCCGTTGGATAGGTTTCTCTG
CCCGTCTTGTAAGGAAGCGGTGCGATTTAAGAATGGCAAGGTGATGCGACCGCACTTTGCTCATATTTCTTTAAAAGAAT
GTCATTTTTATACGGAAAATGAAAGTGCAGAACACTTAAATCTGAAAGCTGTTTTGTTTACTTGGGCTAGAAAGTCCAAT
CATGCGATTCAAGTGGAAGCATATTTACCAGAATTGCAGCAAATCGCAGATTTGTTAGTTGAAAAACAAATTGTGCTTGA
AGTTCAGTGTAGCTCACTTAGTCAAAAACGCTTAAAAGAGCGTACGGAAAGTTATCGTCAGCATGGCTATCGCGTTCTTT
GGCTCTTGGGAAAGAAACTTTGGCTGAAAAATACTTTGACCAATTTACAAAAGGATTTTCTCTATTTCAGTCAAAATATG
GGCTTTCATATGTGGGAATTGGACGAACAAAAACAGCTTTTGAGGCTTAAATACTTGATTCATGAAGATTTGCATGGCAA
GGTTCAGTATAAGGAGAAAAGTTTTGCTTTTGGTAAAGGAAACCTTTTAGACATCTTTCGTCAGCCATTCTGCAAGCAGG
AAATGACGAGTTTTCTGGCAAAAGAAGATAAAAATATTTGCAGTTATGTGCGCCAGCAGCTCTACTATCAGCAGCCCAAA
TGGATGAAATGGCAGGCAGAATTGTATCAAACGGGTGATAATTTATTAACCAAAACGGCTAGTGACTTTTATCCGCAAGT
CCAACCTGTTCGTTCCAGCTCTTTCTGTCAGATTTTTCAGGATCTCACGCCTTATTACCAGCAATTTTCAGCTTATTATG
AAAAAGAAAAAAATAAAAATCTTCAAATTCTCTATCCTCCAGCTTTTTATGCAAAGATTTTTGGCAATATTTATGATAGA
ATAGGAAGGACGGAGGAAATTTTATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGACCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB I0SBF6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.503

91.545

0.49

  coiA Streptococcus pneumoniae Rx1

52.866

91.545

0.484

  coiA Streptococcus pneumoniae D39

52.866

91.545

0.484

  coiA Streptococcus pneumoniae R6

52.866

91.545

0.484

  coiA Streptococcus pneumoniae TIGR4

52.548

91.545

0.481

  coiA Lactococcus lactis subsp. cremoris KW2

45.062

94.461

0.426


Multiple sequence alignment