Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LG323_RS10495 Genome accession   NZ_CP085242
Coordinates   2237230..2238717 (+) Length   495 a.a.
NCBI ID   WP_404415824.1    Uniprot ID   -
Organism   Marinospirillum sp. strain ABH-597     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2232230..2243717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG323_RS10470 (LG323_10480) speA 2232695..2234596 (-) 1902 WP_404415816.1 biosynthetic arginine decarboxylase -
  LG323_RS10475 (LG323_10485) glnK 2234608..2234946 (-) 339 WP_310696628.1 P-II family nitrogen regulator -
  LG323_RS10480 (LG323_10490) - 2235064..2236314 (-) 1251 WP_404415820.1 ammonium transporter -
  LG323_RS10485 (LG323_10495) glnK 2236341..2236679 (-) 339 WP_310696626.1 P-II family nitrogen regulator -
  LG323_RS10490 (LG323_10500) - 2236953..2237198 (+) 246 WP_310696625.1 accessory factor UbiK family protein -
  LG323_RS10495 (LG323_10505) comM 2237230..2238717 (+) 1488 WP_404415824.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LG323_RS10500 (LG323_10510) - 2238735..2239928 (+) 1194 WP_310696623.1 CBS domain-containing protein -
  LG323_RS10505 (LG323_10515) - 2240027..2242642 (+) 2616 WP_404415828.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  LG323_RS10510 (LG323_10520) metF 2242639..2243472 (-) 834 WP_404415831.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53132.22 Da        Isoelectric Point: 7.5704

>NTDB_id=616311 LG323_RS10495 WP_404415824.1 2237230..2238717(+) (comM) [Marinospirillum sp. strain ABH-597]
MSLALVKTRAILGLEAPEVRVEVHLANGLPAFNLVGLPEAAVKESRDRVRSALLTAGFEFPSRRITVNLSPADLPKEGGR
FDLPIALGILAASGQISQSSLDAHEFIGELALNGELRPVKGVLPTALAVARKQGSLLLAAENAAEAALVSQLQVKAARHL
LEISAFLLGQQELPLALPELPESTSQTSFPDLSTVKGQAAAKRALEVAAAGGHNLLLTGPPGSGKTLLASCLPGLLPELD
EEEALEVAAIQSICQGFQVSQWRQRPFRSPHHSSSAVALVGGGSNPRPGEISLAHQGVLFMDELPEFPRRVLEVLREPLE
SGEIHLARAAHRATYPANFLLVAAMNPCPCGHLGDPHQACSCSPGQISRYQGRLSGPLLDRIDLHLEVPALPPEDLWKPA
SGESTLSVRERVIKARQQQKQRAAKLNSQLTAAELEEQVPLKPELKQLLSQAMHKMNLSARAAHRVLKVALTLADLEGSR
RLERNHLLEALGYRK

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=616311 LG323_RS10495 WP_404415824.1 2237230..2238717(+) (comM) [Marinospirillum sp. strain ABH-597]
ATGAGCCTGGCACTGGTGAAAACCCGAGCAATCCTGGGTCTGGAAGCCCCGGAAGTGAGAGTTGAAGTGCATCTGGCCAA
TGGCCTGCCCGCCTTTAATCTGGTGGGTTTGCCGGAAGCGGCCGTGAAGGAAAGTCGAGACCGGGTTCGCAGTGCCCTGC
TGACTGCTGGTTTTGAGTTTCCCAGCCGCCGTATCACGGTCAACCTGTCACCGGCTGATCTGCCCAAAGAAGGTGGACGC
TTTGATCTGCCGATTGCTCTGGGCATTTTGGCTGCCTCCGGTCAGATTTCCCAGTCCAGTCTGGATGCCCATGAGTTTAT
CGGTGAGCTGGCGCTGAATGGTGAGCTACGCCCCGTCAAGGGAGTTCTGCCCACGGCTTTGGCGGTTGCCCGGAAACAGG
GCAGCCTGCTTTTGGCAGCTGAGAATGCTGCCGAAGCGGCTCTGGTCAGCCAGTTGCAAGTCAAGGCCGCCCGGCATCTT
CTGGAGATATCGGCTTTTTTACTGGGGCAGCAGGAGCTGCCTCTGGCCTTGCCGGAGCTTCCCGAATCAACAAGCCAGAC
CTCTTTTCCAGATTTAAGCACTGTCAAGGGTCAGGCGGCTGCCAAACGAGCGCTGGAAGTGGCTGCTGCGGGGGGGCATA
ATCTTTTATTGACCGGCCCGCCCGGCTCCGGAAAAACCCTGCTTGCCAGTTGCCTGCCAGGCTTGCTGCCCGAGCTGGAT
GAAGAGGAGGCGCTGGAGGTTGCTGCCATCCAGTCGATTTGTCAGGGGTTTCAGGTCAGCCAGTGGCGACAGAGACCTTT
TCGTTCTCCGCACCACTCCAGTTCTGCTGTGGCCCTGGTGGGTGGTGGCAGCAACCCCCGGCCTGGAGAAATCAGTCTGG
CTCATCAGGGTGTGCTTTTCATGGATGAGCTGCCGGAGTTTCCGCGCCGGGTTCTGGAGGTTTTGCGGGAGCCTTTGGAG
TCCGGGGAGATTCATTTGGCCAGGGCGGCGCACAGGGCAACCTATCCGGCCAACTTTCTGCTGGTGGCGGCCATGAATCC
CTGTCCCTGCGGGCACCTGGGTGACCCTCATCAGGCCTGCAGCTGTTCGCCGGGGCAAATCAGTCGCTACCAGGGGCGCC
TGTCCGGCCCCTTGCTGGATCGGATTGATTTGCATCTGGAGGTGCCTGCCCTGCCTCCAGAGGATCTCTGGAAACCGGCT
TCGGGTGAAAGCACTCTTTCGGTGCGTGAGCGGGTGATCAAAGCCAGGCAGCAACAAAAGCAAAGAGCCGCTAAACTGAA
TTCGCAATTAACGGCGGCAGAGCTTGAAGAGCAGGTGCCACTGAAGCCGGAACTTAAACAGCTGCTCAGTCAGGCCATGC
ACAAAATGAATCTGTCAGCCAGGGCTGCACACCGGGTTCTCAAGGTGGCTTTAACGCTTGCCGACCTTGAAGGTTCACGC
AGGCTTGAGCGAAATCATTTACTGGAAGCCCTGGGCTACCGAAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.912

100

0.564
  comM Vibrio campbellii strain DS40M4

55.936

100

0.562
  comM Haemophilus influenzae Rd KW20

54.709

100

0.552
  comM Glaesserella parasuis strain SC1401

52.4

100

0.529
  comM Legionella pneumophila str. Paris

52.209

100

0.525
  comM Legionella pneumophila strain ERS1305867

52.209

100

0.525
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.515

100

0.483