Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NQZ80_RS19935 Genome accession   NZ_CP102244
Coordinates   4163954..4164394 (+) Length   146 a.a.
NCBI ID   WP_000360907.1    Uniprot ID   -
Organism   Escherichia coli O7:H15 strain ST70     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4158954..4169394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ80_RS19915 (NQZ80_19915) aroP 4159952..4161325 (+) 1374 WP_000969912.1 aromatic amino acid transporter AroP -
  NQZ80_RS19920 (NQZ80_19920) ampE 4161368..4162222 (-) 855 WP_000172019.1 beta-lactamase regulator AmpE -
  NQZ80_RS19925 (NQZ80_19925) ampD 4162219..4162770 (-) 552 WP_000923726.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NQZ80_RS19930 (NQZ80_19930) nadC 4162858..4163751 (+) 894 WP_042110472.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NQZ80_RS19935 (NQZ80_19935) pilA 4163954..4164394 (+) 441 WP_000360907.1 prepilin peptidase-dependent pilin Machinery gene
  NQZ80_RS19940 (NQZ80_19940) pilB 4164404..4165789 (+) 1386 WP_001025168.1 type II secretion system protein GspE Machinery gene
  NQZ80_RS19945 (NQZ80_19945) hofC 4165779..4166981 (+) 1203 WP_000157287.1 protein transport protein HofC -
  NQZ80_RS19950 (NQZ80_19950) guaC 4167016..4168059 (-) 1044 WP_001217337.1 GMP reductase -
  NQZ80_RS19955 (NQZ80_19955) - 4168215..4168259 (-) 45 WP_120795372.1 protein YacM -
  NQZ80_RS19960 (NQZ80_19960) coaE 4168284..4168904 (+) 621 WP_001269513.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15651.78 Da        Isoelectric Point: 4.3938

>NTDB_id=615984 NQZ80_RS19935 WP_000360907.1 4163954..4164394(+) (pilA) [Escherichia coli O7:H15 strain ST70]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSTMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=615984 NQZ80_RS19935 WP_000360907.1 4163954..4164394(+) (pilA) [Escherichia coli O7:H15 strain ST70]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGTGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGTAATGGCATCCCCTCGCCTACCACTACCCGC
TATGTTTCAACCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACGCCGGGTTGGGATAACGCAAACGGCGTCACCGGTTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363