Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LG312_RS08275 Genome accession   NZ_CP085221
Coordinates   1785187..1786689 (-) Length   500 a.a.
NCBI ID   WP_404299293.1    Uniprot ID   -
Organism   Halomonas sp. strain DBC-59     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1780187..1791689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG312_RS08250 (LG312_08270) - 1780293..1780673 (+) 381 WP_404299286.1 DUF423 domain-containing protein -
  LG312_RS08255 (LG312_08275) - 1780674..1781087 (-) 414 WP_379756490.1 PaaI family thioesterase -
  LG312_RS08260 (LG312_08280) - 1781285..1783459 (-) 2175 WP_404299289.1 malate synthase G -
  LG312_RS08265 (LG312_08285) - 1783695..1784681 (+) 987 WP_404299291.1 alpha/beta hydrolase -
  LG312_RS08270 (LG312_08290) - 1784678..1785166 (+) 489 WP_379756498.1 hypothetical protein -
  LG312_RS08275 (LG312_08295) comM 1785187..1786689 (-) 1503 WP_404299293.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LG312_RS08280 (LG312_08300) - 1786761..1787093 (-) 333 WP_379756504.1 accessory factor UbiK family protein -
  LG312_RS08285 (LG312_08305) - 1787373..1787711 (+) 339 WP_253447610.1 P-II family nitrogen regulator -
  LG312_RS08290 (LG312_08310) - 1787737..1788987 (+) 1251 WP_379756507.1 ammonium transporter -
  LG312_RS08295 (LG312_08315) glnK 1789135..1789473 (+) 339 WP_379756510.1 P-II family nitrogen regulator -
  LG312_RS08300 (LG312_08320) - 1789586..1790362 (-) 777 WP_404299297.1 ferredoxin--NADP reductase -
  LG312_RS08305 (LG312_08325) - 1790524..1791450 (+) 927 WP_404299299.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53581.92 Da        Isoelectric Point: 8.3026

>NTDB_id=615984 LG312_RS08275 WP_404299293.1 1785187..1786689(-) (comM) [Halomonas sp. strain DBC-59]
MTLAIVHTRAGLGLEAPEVQVEVHLANGLPGMTLVGLPETAVKESRERVRSALVNAGLDYPLRRITLNLAPADLPKEGGR
FDLPIALGLLLASGQLPPTALKDTESVGELALDGGLRPISGVLPLALATRHAGRRLIVPRANADEAALAGDLEVLPADHL
LEVVAHLLGQTLITPHRLSRPPEPATSLPDLAEVRGQYQARRALEVAAAGSHNLLFAGPPGTGKTMLASRLPGILPPLTD
EEALEVAAVRSVSGLPLAAEWGRRPFRAPHHTASAVALVGGGSKPRPGEISLAHHGVLFLDELPEFSRHVLEVMREPMES
GQIHIARASHQRRFPARFQLVAAMNPCPCGHLGDPRQACHCTAAQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAATT
GESSAVVRRRVVSARERQLARGALNAHLAGRELEAACDLCVADRAWLAQVLERLRLSARAYHRVLRVALTLADLAGEPKP
AREHLIEAIGYRQLDRLLKG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=615984 LG312_RS08275 WP_404299293.1 1785187..1786689(-) (comM) [Halomonas sp. strain DBC-59]
ATGACGCTGGCGATTGTCCATACCCGTGCGGGCCTCGGTCTCGAGGCACCCGAGGTGCAGGTGGAGGTGCATCTAGCCAA
TGGTTTGCCGGGGATGACCCTTGTAGGCCTGCCCGAGACAGCGGTGAAGGAGAGCCGCGAACGGGTGCGCAGCGCTCTGG
TCAACGCCGGGCTAGACTATCCCCTGCGCCGTATCACTCTTAATCTGGCGCCCGCCGACCTGCCCAAAGAGGGCGGTCGC
TTTGATCTGCCCATCGCCCTGGGGCTGCTGCTTGCCTCGGGACAGCTTCCCCCGACTGCCCTGAAGGACACCGAGAGCGT
CGGAGAGCTGGCGCTGGACGGCGGGCTGCGTCCAATCTCTGGCGTGTTGCCTCTGGCCCTGGCCACTCGACATGCCGGGC
GCCGTCTGATCGTGCCCCGGGCCAATGCCGATGAGGCGGCTCTCGCCGGCGATCTCGAGGTCCTGCCCGCCGACCATCTG
CTTGAGGTGGTTGCCCACCTGCTGGGGCAGACGCTCATCACACCCCATCGTCTGTCGCGTCCGCCGGAGCCGGCCACATC
GTTGCCTGACCTCGCCGAAGTGCGTGGCCAGTATCAGGCGCGCCGCGCGCTGGAGGTGGCCGCCGCGGGATCTCACAACC
TGCTGTTCGCCGGGCCGCCGGGCACCGGCAAGACCATGCTGGCCAGCCGTTTGCCGGGCATCCTTCCGCCGCTTACTGAT
GAAGAAGCCCTGGAAGTGGCGGCGGTACGTTCGGTGAGTGGGCTGCCCCTGGCCGCCGAGTGGGGGCGGCGGCCCTTCCG
CGCACCTCACCATACGGCCAGCGCTGTGGCTCTGGTAGGGGGCGGTTCGAAACCTCGTCCCGGCGAGATCTCGCTGGCCC
ACCACGGGGTGCTGTTCCTCGACGAACTGCCGGAGTTCTCGCGTCATGTCCTTGAGGTCATGCGCGAGCCCATGGAATCG
GGCCAGATTCATATCGCCCGGGCCAGCCATCAGCGTCGATTTCCTGCCCGCTTTCAATTGGTAGCGGCTATGAATCCTTG
CCCCTGCGGCCACCTGGGCGATCCGCGTCAGGCCTGCCACTGCACGGCAGCCCAGATACAGCGCTATCAGGCGAGGCTAT
CAGGGCCGCTGCTCGACCGCATCGACTTGCAGGTCGAGGTCCCGGCGCTGCCGCCGGAGCAGCTCACCGCAGCTACTACG
GGAGAGTCCTCGGCGGTTGTGCGCAGGCGCGTGGTCTCTGCCCGAGAGCGTCAGCTGGCGCGAGGGGCGCTCAACGCTCA
CCTGGCGGGACGAGAGCTGGAGGCGGCCTGCGATCTATGCGTCGCCGATCGAGCCTGGCTGGCGCAGGTGCTGGAGCGGC
TAAGGCTCTCGGCACGGGCCTACCATCGGGTGTTGCGGGTGGCCCTGACCCTGGCCGATTTGGCGGGCGAACCTAAACCG
GCCCGTGAGCACCTGATCGAGGCGATCGGCTATCGCCAGTTGGATCGATTGCTCAAGGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.972

100

0.572
  comM Vibrio cholerae strain A1552

56.574

100

0.568
  comM Haemophilus influenzae Rd KW20

54.832

100

0.556
  comM Glaesserella parasuis strain SC1401

53.922

100

0.55
  comM Legionella pneumophila str. Paris

50.898

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.898

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.441

100

0.482