Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Ped0941_RS06400 Genome accession   NZ_CP085178
Coordinates   1260371..1261429 (-) Length   352 a.a.
NCBI ID   WP_002833728.1    Uniprot ID   A0A0R2HGI1
Organism   Pediococcus pentosaceus strain MGB0941     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1255371..1266429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ped0941_RS06390 (Ped0941_06395) mutS 1255908..1258529 (-) 2622 WP_061811878.1 DNA mismatch repair protein MutS -
  Ped0941_RS06395 (Ped0941_06400) rny 1258643..1260202 (-) 1560 WP_011673585.1 ribonuclease Y -
  Ped0941_RS06400 (Ped0941_06405) recA 1260371..1261429 (-) 1059 WP_002833728.1 recombinase RecA Machinery gene
  Ped0941_RS06405 (Ped0941_06410) - 1261519..1262760 (-) 1242 WP_061811880.1 competence/damage-inducible protein A -
  Ped0941_RS06410 (Ped0941_06415) pgsA 1262870..1263451 (-) 582 WP_094104371.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Ped0941_RS06415 (Ped0941_06420) - 1263464..1264333 (-) 870 WP_248912718.1 helix-turn-helix domain-containing protein -
  Ped0941_RS06420 (Ped0941_06425) - 1264379..1265104 (-) 726 WP_061811882.1 SDR family oxidoreductase -
  Ped0941_RS06425 (Ped0941_06430) - 1265101..1266393 (-) 1293 WP_094104369.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37697.89 Da        Isoelectric Point: 5.3503

>NTDB_id=615739 Ped0941_RS06400 WP_002833728.1 1260371..1261429(-) (recA) [Pediococcus pentosaceus strain MGB0941]
MADERQEALNKALKKIEKNFGKGSIMRMGDAVDTQISTIPSGSLALDDALGVGGFPKGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENAMDPAYATNLGVDIDSLLLSQPDTGEEGLAIADALVSSGAIDLVVIDSVAALVPRAEIDGEMGD
AHVGLQARMMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGADVIGNR
VRIKVVKNKVAPPFKKAEVDIMYGHGISQTGEMIDMAVEKDLVGKSGSWYSYGDERIGQGRENAKKYIDEHPDVRAEILG
KVREAYGMVADPTSEVKKESSKKSSTDDSDLA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=615739 Ped0941_RS06400 WP_002833728.1 1260371..1261429(-) (recA) [Pediococcus pentosaceus strain MGB0941]
TTGGCAGACGAAAGACAAGAAGCTTTAAATAAAGCACTTAAAAAAATTGAAAAAAACTTTGGTAAAGGATCTATTATGCG
AATGGGGGATGCGGTTGATACGCAAATTTCAACGATTCCCAGTGGTTCTTTAGCATTAGACGATGCACTAGGAGTTGGCG
GTTTTCCTAAGGGGAGAATCGTCGAAATTTATGGGCCTGAAAGTTCTGGTAAGACAACTGTAGCTTTACATGCAGTTGCT
GAAGTGCAAAAACGTGGGGGAACTGCTGCATATATTGATGCTGAAAACGCGATGGATCCTGCATATGCAACTAATTTGGG
CGTTGATATCGATTCACTCTTACTTTCACAACCAGACACTGGTGAAGAAGGATTAGCTATTGCCGATGCTTTGGTATCAA
GTGGTGCTATTGACTTGGTCGTTATTGATTCCGTTGCAGCCTTAGTTCCACGTGCTGAAATTGATGGAGAGATGGGGGAT
GCTCATGTTGGCCTCCAAGCTCGGATGATGTCACAAGCACTTCGTAAATTATCTGGTTCGATTAACAAAACTAAGACGAT
TGCGTTATTCATTAACCAAATACGTGAAAAAGTCGGAATTATGTTTGGTAATCCAGAAACAACCCCTGGTGGACGGGCTT
TAAAATTCTATGCAACAATCCGTTTAGAAGTACGCCGTGCAGAACAAATTAAAGATGGTGCCGACGTTATTGGTAACCGT
GTTCGTATTAAAGTGGTAAAAAACAAGGTTGCTCCTCCATTCAAAAAGGCTGAAGTCGATATTATGTATGGTCATGGAAT
TTCGCAAACTGGTGAAATGATTGACATGGCTGTTGAAAAAGATTTGGTCGGTAAGAGTGGTTCATGGTATTCATATGGAG
ACGAACGCATTGGACAGGGTCGTGAGAATGCTAAGAAGTACATTGATGAACATCCAGACGTTCGTGCAGAAATTCTTGGT
AAAGTTCGTGAAGCGTATGGTATGGTAGCTGATCCTACGAGTGAAGTTAAAAAAGAAAGTTCCAAAAAATCTTCAACTGA
TGATTCAGATTTAGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2HGI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.437

94.886

0.773
  recA Bacillus subtilis subsp. subtilis str. 168

72.256

93.182

0.673
  recA Streptococcus pneumoniae D39

66.762

99.148

0.662
  recA Streptococcus pneumoniae R6

66.762

99.148

0.662
  recA Streptococcus pneumoniae TIGR4

66.762

99.148

0.662
  recA Streptococcus pneumoniae Rx1

66.762

99.148

0.662
  recA Streptococcus mitis SK321

67.449

96.875

0.653
  recA Lactococcus lactis subsp. cremoris KW2

68.249

95.739

0.653
  recA Streptococcus mutans UA159

65.057

100

0.651
  recA Streptococcus mitis NCTC 12261

66.472

97.443

0.648
  recA Streptococcus pyogenes NZ131

67.674

94.034

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.818

100

0.568
  recA Vibrio cholerae strain A1552

56.818

100

0.568
  recA Neisseria gonorrhoeae MS11

58.358

96.875

0.565
  recA Neisseria gonorrhoeae MS11

58.358

96.875

0.565
  recA Neisseria gonorrhoeae strain FA1090

58.358

96.875

0.565
  recA Ralstonia pseudosolanacearum GMI1000

63.259

88.92

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

93.182

0.557
  recA Pseudomonas stutzeri DSM 10701

59.133

91.761

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.769

92.33

0.543
  recA Acinetobacter baylyi ADP1

58.642

92.045

0.54
  recA Helicobacter pylori 26695

58.282

92.614

0.54
  recA Helicobacter pylori strain NCTC11637

58.282

92.614

0.54
  recA Glaesserella parasuis strain SC1401

54.155

99.148

0.537
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.447

93.466

0.537
  recA Acinetobacter baumannii D1279779

58.025

92.045

0.534