Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Ped0941_RS07520 Genome accession   NZ_CP085178
Coordinates   1467246..1468616 (-) Length   456 a.a.
NCBI ID   WP_002833248.1    Uniprot ID   A0AAU7NM61
Organism   Pediococcus pentosaceus strain MGB0941     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1462246..1473616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ped0941_RS07500 (Ped0941_07515) - 1462542..1462955 (-) 414 WP_023440688.1 Mini-ribonuclease 3 -
  Ped0941_RS07505 (Ped0941_07520) cysS 1462948..1464360 (-) 1413 WP_248912774.1 cysteine--tRNA ligase -
  Ped0941_RS07510 (Ped0941_07525) gltX 1464541..1466028 (-) 1488 WP_002833250.1 glutamate--tRNA ligase -
  Ped0941_RS07515 (Ped0941_07530) - 1466098..1467228 (-) 1131 WP_002833249.1 PIN/TRAM domain-containing protein -
  Ped0941_RS07520 (Ped0941_07535) radA 1467246..1468616 (-) 1371 WP_002833248.1 DNA repair protein RadA Machinery gene
  Ped0941_RS07525 (Ped0941_07540) - 1468716..1469249 (-) 534 WP_002833247.1 dUTP diphosphatase -
  Ped0941_RS07530 (Ped0941_07545) - 1469386..1469715 (+) 330 WP_055126397.1 GNAT family N-acetyltransferase -
  Ped0941_RS07535 (Ped0941_07550) rpiA 1469719..1470405 (+) 687 WP_248912775.1 ribose-5-phosphate isomerase RpiA -
  Ped0941_RS07540 (Ped0941_07555) - 1470475..1471821 (+) 1347 WP_248912776.1 C1 family peptidase -
  Ped0941_RS07545 (Ped0941_07560) - 1471897..1472277 (-) 381 WP_002833243.1 helix-turn-helix domain-containing protein -
  Ped0941_RS07550 (Ped0941_07565) - 1472341..1473528 (-) 1188 WP_061811966.1 MFS transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50360.80 Da        Isoelectric Point: 6.7620

>NTDB_id=615743 Ped0941_RS07520 WP_002833248.1 1467246..1468616(-) (radA) [Pediococcus pentosaceus strain MGB0941]
MAKVKTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEVKMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAATDRDVLYVSGEESASQIKMRAERLQVNSERFYLYPETDMSNIRA
VIEELHPQYVIIDSVQTMQEPDIDSAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFQRILIPKNNLKGWNPPKGIEVVGVTTITDAIRKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=615743 Ped0941_RS07520 WP_002833248.1 1467246..1468616(-) (radA) [Pediococcus pentosaceus strain MGB0941]
TTGGCTAAAGTAAAAACACAGTTTTTGTGTTCAGAATGTGGGTATGTTTCACCTAAATTCTTAGGGCGTTGTCCTAATTG
TGGAAGATGGAACACTCTGGTTGAAGAGCGGATTAGTGAACCTAAAAATGAACGTAAGAGTCGCGTTAGTTTTGAGGGTA
AAAGTAGTAAACCACAATTAATTTCAGAAGTTAAAATGCACGAAGAACCGCGAGTTAAAACAGGGATGGAAGAACTGAAC
CGAGTGCTCGGTGGTGGTGTAGTAGATGGCTCACTAGTTCTAATTGGTGGAGATCCAGGAATTGGAAAGTCGACCCTATT
ATTACAACTATCTGGGCAATTAGCTGCTACTGATCGAGATGTTTTATACGTGTCTGGGGAAGAAAGTGCTTCACAGATCA
AGATGCGCGCCGAACGTTTACAGGTTAACAGTGAACGTTTTTACTTATACCCTGAAACTGATATGTCCAATATTCGTGCG
GTCATTGAGGAACTACATCCTCAGTATGTAATTATTGATTCTGTTCAAACCATGCAAGAGCCCGACATTGATTCAGCAGT
AGGTAGTGTATCGCAAATTCGAGAAATTACAGCTGAATTAATGCAAATTGCTAAAACAAATAACATTACTATTTTTATTG
TTGGTCATGTAACTAAAGGCGGAGCCATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTACTTTATTTTGAA
GGCGATTTGCATCATACGTATCGAATTTTACGAGCGGTTAAAAATCGATTTGGTTCTACGAATGAATTGGGAATTTTCGA
GATGCGAGAGGAAGGGCTTCGAGAAGTAGCCAATCCTTCGGAAATCTTTTTAGAGGAACGCCTGCAAGATGCTAACGGTT
CCGCTATTGTGGTTTCGATGGAAGGTACTCGACCAATTTTGGTCGAAATTCAAGCTTTGATTACGCCTACCATTTTTGGG
AATGCTCAGCGGACTGCTAGCGGGTTGGATCGTAACCGAGTCTCATTAATTATGGCAGTTTTAGAAAAAAGGGCTAATTT
AACGTTGCAGAACCAAGACGCCTACTTAAAGGCTGCTGGCGGAGTGAAATTGGATGAGCCAGCAATTGATTTGGCAATTG
CGATGAGTATCGTATCGAGTTTTAAGAATCAAGGGACGAGACCGACTGATAGCTTTGTTGGCGAAATTGGTTTAACTGGT
GAAATCCGACGGGTTAATCGAATTGAACAACGGGTTGCCGAAGCTCAAAAACTAGGTTTTCAACGAATTTTAATTCCTAA
AAATAATTTGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGG
CGTTTAATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.813

99.781

0.667
  radA Streptococcus mitis NCTC 12261

66.813

99.781

0.667
  radA Streptococcus mitis SK321

66.813

99.781

0.667
  radA Streptococcus pneumoniae TIGR4

66.813

99.781

0.667
  radA Streptococcus pneumoniae D39

66.813

99.781

0.667
  radA Streptococcus pneumoniae R6

66.813

99.781

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651