Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   Ped0941_RS00455 Genome accession   NZ_CP085178
Coordinates   89954..92128 (+) Length   724 a.a.
NCBI ID   WP_248912901.1    Uniprot ID   -
Organism   Pediococcus pentosaceus strain MGB0941     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 84954..97128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ped0941_RS00430 (Ped0941_00435) - 85609..86367 (+) 759 WP_002834215.1 ChbG/HpnK family deacetylase -
  Ped0941_RS00435 (Ped0941_00440) - 86747..87025 (-) 279 WP_002834213.1 bacteriocin immunity protein -
  Ped0941_RS00440 (Ped0941_00445) - 87040..87222 (-) 183 WP_011672822.1 class II bacteriocin -
  Ped0941_RS00445 (Ped0941_00450) - 88185..88955 (+) 771 WP_229564806.1 GHKL domain-containing protein -
  Ped0941_RS00450 (Ped0941_00455) - 88974..89720 (+) 747 WP_248912900.1 LytTR family DNA-binding domain-containing protein -
  Ped0941_RS00455 (Ped0941_00460) comA/nlmT 89954..92128 (+) 2175 WP_248912901.1 peptide cleavage/export ABC transporter Regulator
  Ped0941_RS00460 (Ped0941_00465) - 92411..93325 (-) 915 WP_061812734.1 metal ABC transporter solute-binding protein -
  Ped0941_RS00465 (Ped0941_00470) - 93396..93515 (-) 120 WP_011672827.1 putative metal homeostasis protein -
  Ped0941_RS00470 (Ped0941_00475) - 94103..94495 (+) 393 WP_011672828.1 hypothetical protein -
  Ped0941_RS00475 (Ped0941_00480) - 94587..95105 (-) 519 WP_248912902.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 724 a.a.        Molecular weight: 81586.45 Da        Isoelectric Point: 9.6542

>NTDB_id=615725 Ped0941_RS00455 WP_248912901.1 89954..92128(+) (comA/nlmT) [Pediococcus pentosaceus strain MGB0941]
MRSQKWQKFYTAQVDENDCGVAALNMVLKYYGSNYTLAHLRNLAKTTNDGTTALGIVEAAKHLNLNAEAVRTDIDFFSDF
QITFPVIVHVLKDNYLPHYYVVYQVTKTSLIIGDPDPTVNTTTISKARFIKEWTKIAIMITPNIKYKPTKEPRHTLINLV
PLLIKQKKLISLIISAAFLTTLISIAGTYFFQLIIDTYLPQMLNNTLTLVAIGLIAAYLFQAAISYIQSLLTIILGQRLM
VDIILKYVHHLFNLPMAFFATRHVGEITSRFSDASKIIDALGNIMMTLFLDMWILIAVGAFLAYKNIILFLISLIVIPIY
IIIVWIFKKTFHRLNQATMESSAIVNSAIIESLSGIETIKALTGESATKKKIDVLFCDLLRKNLAYQKADQGQQAIKMAT
KLILTVVILWIGTIFVMQHQLSLGQLLTYNALLLYFLTPLENIINLQSKLQSARVANNRLNEIYLVQSEFSKPRMINESY
QLNGDITVNNVNFKYGYSSNTLKNISLTIHRNQKVTIVGMSGSGKTTLAKLLIGFYEIQEQCGNIQINQHNINDISRKVL
RQYINYIPQEPFIFSGTVLDNLLLGSRPNLTQETIDQACSFAEIKADIEKLSQGYYTKLSESGSDLSGGQKQRLSIARAL
LYPAKCLIFDESTSSLDTITEHKIISNLMDMKGKTIIFIAHRLNIAAQTDKVIVLDKGTVVEQGSHQQLLNLNGYYTRLI
NRQG

Nucleotide


Download         Length: 2175 bp        

>NTDB_id=615725 Ped0941_RS00455 WP_248912901.1 89954..92128(+) (comA/nlmT) [Pediococcus pentosaceus strain MGB0941]
ATGCGGTCTCAAAAATGGCAAAAATTTTATACAGCTCAAGTTGATGAAAATGACTGCGGAGTGGCTGCGCTAAATATGGT
TCTTAAGTATTATGGTTCTAATTACACATTGGCACATTTACGTAATCTTGCTAAAACTACTAATGATGGCACCACGGCTC
TAGGCATTGTGGAAGCTGCGAAACACCTAAACTTAAACGCCGAAGCTGTGCGTACAGATATAGATTTTTTTTCTGATTTC
CAAATAACGTTTCCTGTTATCGTCCATGTTTTAAAAGATAACTATTTACCACACTATTATGTTGTTTATCAAGTCACTAA
GACAAGTTTAATTATTGGTGACCCTGATCCAACCGTTAATACTACTACAATATCAAAAGCTCGATTTATTAAAGAATGGA
CCAAAATTGCAATTATGATAACTCCAAATATTAAATATAAACCTACAAAAGAGCCACGACATACACTAATTAATTTAGTA
CCCTTGTTAATCAAACAAAAAAAATTGATTAGTTTAATTATCAGTGCGGCGTTTTTAACGACATTAATTAGTATTGCTGG
TACATATTTTTTTCAATTAATTATTGATACTTACCTACCTCAAATGTTAAACAATACTTTAACGTTAGTTGCTATCGGTC
TAATTGCAGCGTATCTTTTTCAAGCAGCTATTAGTTATATCCAAAGCTTACTCACAATTATATTGGGACAACGACTTATG
GTTGATATCATTCTGAAATATGTTCACCATCTTTTTAATTTACCTATGGCCTTTTTTGCTACTCGGCATGTAGGTGAAAT
AACATCGCGATTTTCTGATGCTAGTAAAATTATTGATGCGCTTGGAAACATTATGATGACGTTATTTTTGGATATGTGGA
TTTTAATTGCAGTAGGTGCCTTTTTAGCTTATAAAAATATTATTTTATTTTTAATTTCATTGATTGTAATTCCAATATAT
ATAATAATCGTTTGGATATTTAAAAAAACTTTCCATCGGTTAAATCAAGCCACAATGGAAAGTAGTGCTATCGTTAACTC
AGCTATTATTGAAAGTTTAAGTGGTATAGAAACCATCAAGGCTTTGACAGGTGAATCAGCCACAAAAAAGAAGATTGACG
TTCTTTTTTGTGATTTATTACGAAAAAATTTAGCTTATCAAAAGGCTGATCAAGGACAACAAGCTATTAAAATGGCTACT
AAATTGATTTTGACTGTTGTTATCCTCTGGATAGGTACAATTTTTGTAATGCAACATCAACTTTCTTTAGGGCAACTGTT
AACCTACAATGCGTTACTTTTGTACTTTCTAACACCGTTAGAAAATATAATTAATTTACAATCTAAATTACAATCAGCAC
GAGTAGCAAATAACCGATTAAATGAGATTTATCTTGTTCAGTCTGAATTTTCAAAACCAAGGATGATTAATGAATCCTAT
CAATTGAATGGTGATATTACGGTCAATAATGTTAATTTTAAATACGGATATAGTTCTAATACGCTTAAAAATATTTCTTT
AACAATTCATCGTAATCAAAAAGTTACGATCGTAGGTATGAGTGGATCTGGTAAAACAACTCTTGCTAAATTATTAATTG
GTTTTTACGAGATCCAAGAACAATGTGGTAACATTCAAATTAATCAGCATAATATAAATGATATTAGTCGTAAGGTTCTA
CGGCAGTACATCAATTATATCCCTCAGGAACCCTTTATTTTTTCTGGTACCGTTTTAGACAACTTATTATTGGGTAGTCG
GCCTAATTTAACCCAAGAAACGATTGATCAAGCTTGTTCTTTTGCTGAAATTAAAGCGGACATTGAAAAATTATCTCAAG
GCTACTACACTAAATTAAGCGAAAGTGGTTCTGATTTATCCGGTGGACAAAAACAACGGTTATCAATAGCTCGTGCATTA
TTGTATCCAGCAAAGTGTCTAATTTTTGACGAATCGACTAGTAGCTTAGACACAATTACTGAACACAAGATTATATCTAA
TTTGATGGATATGAAGGGTAAAACAATAATTTTTATTGCTCATCGTCTTAACATTGCAGCTCAAACTGATAAAGTCATTG
TACTTGATAAAGGGACGGTTGTTGAGCAAGGCTCTCACCAACAACTATTAAATCTTAACGGTTATTACACAAGATTAATT
AACAGACAAGGATAG

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(10-143)

ABC transporter transmembrane region (ABC_membrane)

(172-440)

ABC transporter (ABC_tran)

(502-654)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

51.253

99.171

0.508
  comA Streptococcus gordonii str. Challis substr. CH1

50.49

98.757

0.499
  comA Streptococcus mitis NCTC 12261

49.93

98.757

0.493
  comA Streptococcus pneumoniae R6

49.371

98.757

0.488
  comA Streptococcus pneumoniae Rx1

49.371

98.757

0.488
  comA Streptococcus pneumoniae TIGR4

49.371

98.757

0.488
  comA Streptococcus pneumoniae D39

49.371

98.757

0.488
  comA Streptococcus mitis SK321

49.231

98.757

0.486