Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NQZ90_RS00725 Genome accession   NZ_CP102148
Coordinates   117926..118333 (+) Length   135 a.a.
NCBI ID   WP_141599724.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112926..123333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS00700 (NQZ90_00700) - 114327..114692 (+) 366 WP_014637310.1 DUF1033 family protein -
  NQZ90_RS00705 (NQZ90_00705) - 114727..115677 (-) 951 WP_014637311.1 S66 peptidase family protein -
  NQZ90_RS00710 (NQZ90_00710) comGA 115763..116713 (+) 951 WP_203200325.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ90_RS00715 (NQZ90_00715) comGB 116625..117662 (+) 1038 WP_257110428.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ90_RS00720 (NQZ90_00720) comGC 117664..117945 (+) 282 WP_141599722.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ90_RS00725 (NQZ90_00725) comGD 117926..118333 (+) 408 WP_141599724.1 competence type IV pilus minor pilin ComGD Machinery gene
  NQZ90_RS00730 (NQZ90_00730) comGE 118305..118598 (+) 294 WP_024405248.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ90_RS00735 (NQZ90_00735) comGF/cglF 118585..119019 (+) 435 WP_141599726.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ90_RS00740 (NQZ90_00740) comGG 118997..119407 (+) 411 WP_024415503.1 competence type IV pilus minor pilin ComGG -
  NQZ90_RS00745 (NQZ90_00745) comGH 119464..120417 (+) 954 WP_141599728.1 class I SAM-dependent methyltransferase Machinery gene
  NQZ90_RS00750 (NQZ90_00750) - 120467..121654 (+) 1188 WP_013730078.1 acetate kinase -
  NQZ90_RS00755 (NQZ90_00755) - 121968..122519 (+) 552 WP_257110272.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15356.63 Da        Isoelectric Point: 9.9678

>NTDB_id=615544 NQZ90_RS00725 WP_141599724.1 117926..118333(+) (comGD) [Streptococcus suis strain DNC15]
MLRRKNKAFTLFESLLTLLVVSFLAISLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAVSSHQSVSLTIGEQEVTNGHQ
MVKAPRSLEVLEGKTITFEENGGNSSLSKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=615544 NQZ90_RS00725 WP_141599724.1 117926..118333(+) (comGD) [Streptococcus suis strain DNC15]
ATGCTACGGCGAAAAAATAAGGCTTTTACTCTGTTTGAAAGTCTGCTGACCTTGTTGGTTGTCAGCTTTCTGGCAATCAG
CCTGTCGGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGTTAGTTCACACCAGTCAGTTAGTCTAACTATCGGCGAACAAGAAGTGACAAATGGTCATCAG
ATGGTGAAAGCGCCTAGAAGTTTAGAAGTATTAGAAGGGAAGACCATCACATTTGAAGAAAATGGAGGAAATTCCTCACT
GTCTAAAATTCGCTTTCGGCTTAGTCGAAAAACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

48.062

95.556

0.459
  comGD Streptococcus mutans UA140

48.062

95.556

0.459
  comGD Streptococcus gordonii str. Challis substr. CH1

48.031

94.074

0.452
  comGD/cglD Streptococcus pneumoniae R6

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae Rx1

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae D39

46.512

95.556

0.444
  comGD/cglD Streptococcus mitis NCTC 12261

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

45.736

95.556

0.437