NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	LIN97_RS03460	Genome accession	NZ_CP085095
Coordinates	664301..665005 (-)	Length	234 a.a.
NCBI ID	WP_005575487.1	Uniprot ID	-
Organism	Aggregatibacter actinomycetemcomitans strain 5R
Function	require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 659301..670005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIN97_RS03440	-	659350..660033 (-)	684	WP_005567036.1	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	-
LIN97_RS03445	-	660339..661997 (+)	1659	WP_249849291.1	phospho-sugar mutase	-
LIN97_RS03450	envC	662206..663465 (+)	1260	WP_025298123.1	murein hydrolase activator EnvC	-
LIN97_RS03455	-	663462..664289 (+)	828	WP_005542516.1	divergent polysaccharide deacetylase family protein	-
LIN97_RS03460	comM	664301..665005 (-)	705	WP_005575487.1	ATP-binding protein	Machinery gene
LIN97_RS03465	-	665141..665803 (+)	663	WP_005559213.1	heteromeric transposase endonuclease subunit TnsA	-
LIN97_RS03470	-	665796..667715 (+)	1920	WP_233119066.1	Mu transposase C-terminal domain-containing protein	-
LIN97_RS03475	-	667715..668589 (+)	875	Protein_679	TniB family NTP-binding protein	-
LIN97_RS03480	-	668547..669665 (+)	1119	WP_005548211.1	TniQ family protein	-

Sequence

Protein

Download Length: 234 a.a. Molecular weight: 26184.03 Da Isoelectric Point: 9.8867

                                >NTDB_id=615507 LIN97_RS03460 WP_005575487.1 664301..665005(-) (comM) [Aggregatibacter actinomycetemcomitans strain 5R]

MPLICNFDSGTIPKPGEISLAHNGVLFLDELPEFERKVLDALRQPLESGEIIISRANAKIQFPAKFQLIAAMNPSPTGHY

QGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQNSGDRGESSATVREKVLKTRAIQLQRAGKINAHLNSKE

IERDCKLTDKDAQFLENALTKLGLSVRAYHRILKVSRTIADLDGEQHINQRHLAEALGYRAMDRLLQKLAKNSA

Nucleotide

Download Length: 705 bp

                                >NTDB_id=615507 LIN97_RS03460 WP_005575487.1 664301..665005(-) (comM) [Aggregatibacter actinomycetemcomitans strain 5R]

ATGCCACTTATTTGTAACTTTGACAGCGGCACGATCCCCAAACCGGGCGAAATTTCCCTCGCTCACAATGGCGTGCTTTT

CTTAGATGAGTTGCCCGAATTTGAACGCAAAGTGCTGGACGCGCTGCGTCAACCATTGGAAAGTGGCGAAATTATTATTT

CCCGCGCCAACGCCAAGATTCAATTTCCGGCAAAATTTCAACTGATTGCCGCGATGAATCCCAGCCCGACAGGGCATTAT

CAAGGCACGCATAATCGCACCTCACCACAACAAGTTATGCGTTATCTGAATCGGTTATCCGGCCCTTTTTTAGATCGCTT

CGATTTATCCATTGAAGTGCCCTTATTACCACAAGGCAGCTTACAAAATAGCGGCGATCGTGGCGAATCCAGCGCAACGG

TGCGAGAAAAAGTCCTGAAAACCCGTGCCATTCAACTTCAGCGCGCCGGCAAAATTAATGCCCATTTAAATAGCAAAGAA

ATCGAACGGGACTGCAAACTAACCGACAAAGACGCACAGTTCCTGGAAAATGCCCTGACTAAACTGGGGCTTTCCGTACG

AGCGTACCACCGCATACTGAAAGTGTCCCGCACCATTGCCGATTTAGATGGAGAACAACACATCAACCAGCGCCATCTGG

CCGAAGCTCTGGGTTATCGGGCAATGGACAGGTTGTTGCAAAAATTGGCGAAAAACTCGGCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(9-118)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(128-220)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Haemophilus influenzae Rd KW20	86.957	98.291	0.855
comM	Glaesserella parasuis strain SC1401	81.034	99.145	0.803
comM	Vibrio cholerae strain A1552	67.873	94.444	0.641
comM	Vibrio campbellii strain DS40M4	65.909	94.017	0.62
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	52	96.154	0.5
comM	Legionella pneumophila str. Paris	51.869	91.453	0.474
comM	Legionella pneumophila strain ERS1305867	51.869	91.453	0.474

Detailed information NTG0615507