NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	NQZ91_RS07010	Genome accession	NZ_CP102145
Coordinates	1409234..1409824 (-)	Length	196 a.a.
NCBI ID	WP_105122400.1	Uniprot ID	-
Organism	Streptococcus suis strain DNS20
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1404234..1414824

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQZ91_RS06980 (NQZ91_06980)	-	1404593..1404859 (-)	267	WP_105111771.1	IreB family regulatory phosphoprotein	-
NQZ91_RS06985 (NQZ91_06985)	spx	1404966..1405364 (-)	399	WP_105111770.1	transcriptional regulator Spx	-
NQZ91_RS06990 (NQZ91_06990)	recA	1405522..1406706 (-)	1185	WP_105110232.1	recombinase RecA	Machinery gene
NQZ91_RS06995 (NQZ91_06995)	cinA	1406758..1407939 (-)	1182	WP_105122397.1	competence/damage-inducible protein A	Machinery gene
NQZ91_RS07000 (NQZ91_07000)	-	1408009..1408584 (-)	576	WP_249338965.1	DNA-3-methyladenine glycosylase I	-
NQZ91_RS07005 (NQZ91_07005)	-	1408584..1409225 (-)	642	WP_125266299.1	hypothetical protein	-
NQZ91_RS07010 (NQZ91_07010)	ruvA	1409234..1409824 (-)	591	WP_105122400.1	Holliday junction branch migration protein RuvA	Machinery gene
NQZ91_RS07015 (NQZ91_07015)	hexB	1409831..1411780 (-)	1950	WP_257117212.1	DNA mismatch repair endonuclease MutL	Machinery gene
NQZ91_RS07020 (NQZ91_07020)	-	1411906..1412082 (-)	177	WP_161942998.1	hypothetical protein	-
NQZ91_RS07025 (NQZ91_07025)	-	1412127..1412573 (-)	447	WP_257117213.1	DUF3021 domain-containing protein	-
NQZ91_RS07030 (NQZ91_07030)	-	1412570..1413013 (-)	444	WP_105110239.1	LytTR family DNA-binding domain-containing protein	-
NQZ91_RS07035 (NQZ91_07035)	-	1413162..1414082 (-)	921	WP_257117215.1	magnesium transporter CorA family protein	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21775.16 Da Isoelectric Point: 6.0160

                                >NTDB_id=615474 NQZ91_RS07010 WP_105122400.1 1409234..1409824(-) (ruvA) [Streptococcus suis strain DNS20]

MYDYIKGKLTKITAKYIVIEVTGIGYILHVANPYAFSGHVNQEVTVYTHQVIREDAHLLYGFMTEAEKSVFLSLISVSGI

GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMVLDLEGRFVMSEETGPVETSAPTSENHALEEAMEAME

ALGYRPAELKKIKKFFDGTTDTAENYIKSALKMLMK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=615474 NQZ91_RS07010 WP_105122400.1 1409234..1409824(-) (ruvA) [Streptococcus suis strain DNS20]

ATGTACGACTATATCAAAGGAAAACTTACGAAAATCACTGCTAAATACATCGTCATTGAAGTGACGGGTATTGGCTACAT

TCTTCATGTGGCCAATCCTTACGCTTTTTCTGGCCATGTCAACCAAGAAGTGACGGTGTACACGCATCAAGTCATTCGAG

AAGATGCCCACTTGCTTTACGGATTTATGACAGAAGCTGAAAAGTCTGTCTTTCTCAGCCTGATTTCTGTGTCTGGTATC

GGTCCGACAACAGCTCTAGCCATCATTGCCGTGGATGATAATGACGGGCTGGTTCGGGCCATTGAGCAGAAAAATATTAC

CTACCTGACCAAGTTTCCGAAAATCGGTAAAAAAACAGCCCAGCAAATGGTGCTGGACTTGGAAGGCAGGTTTGTTATGA

GCGAAGAAACAGGTCCCGTCGAAACGTCGGCTCCGACCAGTGAAAATCATGCCTTGGAAGAAGCAATGGAGGCAATGGAG

GCACTCGGCTACCGACCGGCTGAACTCAAGAAAATCAAGAAATTCTTCGACGGCACGACCGATACCGCTGAGAATTACAT

CAAGTCCGCCCTCAAGATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Streptococcus pneumoniae TIGR4	75.127	100	0.755
ruvA	Streptococcus pneumoniae R6	75.127	100	0.755
ruvA	Streptococcus pneumoniae D39	75.127	100	0.755
ruvA	Bacillus subtilis subsp. subtilis str. 168	40.291	100	0.423

Detailed information NTG0615474