Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LIN95_RS02050 Genome accession   NZ_CP085094
Coordinates   381211..381690 (+) Length   159 a.a.
NCBI ID   WP_005544986.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 5S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 376211..386690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN95_RS02030 - 376470..376880 (+) 411 WP_005589530.1 MerR family transcriptional regulator -
  LIN95_RS02035 - 376957..377763 (-) 807 WP_249849260.1 IS3 family transposase -
  LIN95_RS02040 - 377760..378132 (-) 373 Protein_399 helix-turn-helix domain-containing protein -
  LIN95_RS02045 uvrA 378210..381041 (-) 2832 WP_233115438.1 excinuclease ABC subunit UvrA -
  LIN95_RS02050 ssb 381211..381690 (+) 480 WP_005544986.1 single-stranded DNA-binding protein Machinery gene
  LIN95_RS02055 - 381796..382650 (-) 855 WP_005544984.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  LIN95_RS02060 aroB 382653..383741 (-) 1089 WP_005544982.1 3-dehydroquinate synthase -
  LIN95_RS02065 aroK 383765..384292 (-) 528 WP_005555432.1 shikimate kinase AroK -
  LIN95_RS02070 comE 384506..385915 (-) 1410 WP_005566816.1 type IV pilus secretin PilQ Machinery gene
  LIN95_RS02075 - 385935..386327 (-) 393 WP_005544975.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17861.64 Da        Isoelectric Point: 5.3111

>NTDB_id=615474 LIN95_RS02050 WP_005544986.1 381211..381690(+) (ssb) [Aggregatibacter actinomycetemcomitans strain 5S]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQSGGNYTPTSQPSYPNQQQSAPRSAPASKPAAEAPMDNFDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=615474 LIN95_RS02050 WP_005544986.1 381211..381690(+) (ssb) [Aggregatibacter actinomycetemcomitans strain 5S]
ATGGCTGGAGTAAATAAAGTGATTATTGTCGGTAATTTAGGTAACGATCCTGAAGTCCGCACCATGCCGAACGGCGAAGC
CGTCGCCAATATCACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAACACCGGTGAACGCCGCGAAGTCACCGAATGGC
ACCGCATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGGTCTAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAGGGCGACGTTTTACAAAT
GTTAGACAGCCGCGCCGATCGCCAATCCGGCGGAAACTACACACCGACATCCCAACCAAGTTATCCAAACCAACAACAAA
GCGCCCCACGCAGTGCGCCGGCAAGTAAACCTGCCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

70

100

0.792
  ssb Vibrio cholerae strain A1552

57.471

100

0.629
  ssb Neisseria meningitidis MC58

47.159

100

0.522
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.522