Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LIN99_RS01545 Genome accession   NZ_CP085093
Coordinates   299856..300560 (+) Length   234 a.a.
NCBI ID   WP_005575487.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 23S     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 294856..305560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN99_RS01525 - 295196..296314 (-) 1119 WP_005548211.1 TniQ family protein -
  LIN99_RS01530 - 296272..297146 (-) 875 Protein_295 TniB family NTP-binding protein -
  LIN99_RS01535 - 297146..299065 (-) 1920 WP_233119066.1 Mu transposase C-terminal domain-containing protein -
  LIN99_RS01540 - 299058..299720 (-) 663 WP_005559213.1 heteromeric transposase endonuclease subunit TnsA -
  LIN99_RS01545 comM 299856..300560 (+) 705 WP_005575487.1 ATP-binding protein Machinery gene
  LIN99_RS01550 - 300572..301399 (-) 828 WP_005542516.1 divergent polysaccharide deacetylase family protein -
  LIN99_RS01555 envC 301396..302655 (-) 1260 WP_025298123.1 murein hydrolase activator EnvC -
  LIN99_RS01560 - 302864..304522 (-) 1659 WP_005571009.1 phospho-sugar mutase -
  LIN99_RS01565 - 304828..305511 (+) 684 WP_005567036.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26184.03 Da        Isoelectric Point: 9.8867

>NTDB_id=615448 LIN99_RS01545 WP_005575487.1 299856..300560(+) (comM) [Aggregatibacter actinomycetemcomitans strain 23S]
MPLICNFDSGTIPKPGEISLAHNGVLFLDELPEFERKVLDALRQPLESGEIIISRANAKIQFPAKFQLIAAMNPSPTGHY
QGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQNSGDRGESSATVREKVLKTRAIQLQRAGKINAHLNSKE
IERDCKLTDKDAQFLENALTKLGLSVRAYHRILKVSRTIADLDGEQHINQRHLAEALGYRAMDRLLQKLAKNSA

Nucleotide


Download         Length: 705 bp        

>NTDB_id=615448 LIN99_RS01545 WP_005575487.1 299856..300560(+) (comM) [Aggregatibacter actinomycetemcomitans strain 23S]
ATGCCACTTATTTGTAACTTTGACAGCGGCACGATCCCCAAACCGGGCGAAATTTCCCTCGCTCACAATGGTGTGCTTTT
CTTAGATGAGTTGCCCGAATTTGAACGCAAAGTGCTGGACGCGCTGCGTCAACCATTGGAAAGTGGCGAAATTATTATTT
CCCGCGCCAACGCCAAGATTCAATTTCCGGCAAAATTTCAACTGATTGCCGCGATGAATCCCAGCCCGACAGGGCATTAT
CAAGGCACGCATAATCGCACCTCACCACAACAAGTTATGCGTTATCTGAATCGGTTATCCGGCCCTTTTTTAGATCGCTT
CGATTTATCCATTGAAGTGCCCTTATTACCACAAGGCAGCTTACAAAATAGCGGCGATCGTGGCGAATCCAGCGCAACGG
TGCGAGAAAAAGTCCTGAAAACCCGTGCCATTCAACTTCAGCGCGCCGGCAAAATTAATGCCCATTTAAATAGCAAAGAA
ATCGAACGGGACTGCAAACTAACCGACAAAGACGCACAGTTCCTGGAAAATGCCCTGACTAAACTGGGGCTTTCCGTACG
AGCGTACCACCGCATACTGAAAGTGTCCCGCACCATTGCCGATTTAGATGGAGAACAACACATCAACCAGCGCCATCTGG
CCGAAGCTCTGGGTTATCGGGCAATGGACAGGTTGTTGCAAAAATTGGCGAAAAACTCGGCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(9-118)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(128-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

86.957

98.291

0.855
  comM Glaesserella parasuis strain SC1401

81.034

99.145

0.803
  comM Vibrio cholerae strain A1552

67.873

94.444

0.641
  comM Vibrio campbellii strain DS40M4

65.909

94.017

0.62
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

52

96.154

0.5
  comM Legionella pneumophila str. Paris

51.869

91.453

0.474
  comM Legionella pneumophila strain ERS1305867

51.869

91.453

0.474