Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LIO32_RS06535 Genome accession   NZ_CP085087
Coordinates   1301673..1302614 (-) Length   313 a.a.
NCBI ID   WP_024405765.1    Uniprot ID   A0AAP6DTB3
Organism   Streptococcus suis strain Ssuis_MA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1296673..1307614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS06510 prsA 1296778..1297779 (-) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -
  LIO32_RS06515 - 1297840..1298559 (-) 720 WP_009910106.1 O-methyltransferase -
  LIO32_RS06520 - 1298634..1299182 (-) 549 WP_002938103.1 DUF6630 family protein -
  LIO32_RS06525 - 1299198..1299639 (-) 442 Protein_1254 hypothetical protein -
  LIO32_RS06530 pepF 1299641..1301443 (-) 1803 WP_074389756.1 oligoendopeptidase F Regulator
  LIO32_RS06535 coiA 1301673..1302614 (-) 942 WP_024405765.1 competence protein CoiA Machinery gene
  LIO32_RS06540 metG 1302675..1304678 (-) 2004 WP_024405764.1 methionine--tRNA ligase -
  LIO32_RS06545 - 1304835..1305428 (+) 594 WP_024405763.1 DUF1361 domain-containing protein -
  LIO32_RS06550 - 1305728..1306765 (+) 1038 WP_012027206.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36294.89 Da        Isoelectric Point: 7.8956

>NTDB_id=615277 LIO32_RS06535 WP_024405765.1 1301673..1302614(-) (coiA) [Streptococcus suis strain Ssuis_MA2]
MLVALDEDGQVFNVLEHPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKFFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=615277 LIO32_RS06535 WP_024405765.1 1301673..1302614(-) (coiA) [Streptococcus suis strain Ssuis_MA2]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAACATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGTTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTACCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(20-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

50.962

99.681

0.508
  coiA Streptococcus pneumoniae Rx1

50.962

99.681

0.508
  coiA Streptococcus pneumoniae D39

50.962

99.681

0.508
  coiA Streptococcus pneumoniae R6

50.962

99.681

0.508
  coiA Lactococcus lactis subsp. cremoris KW2

41.562

100

0.425