Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NQZ93_RS03370 Genome accession   NZ_CP102141
Coordinates   692297..694510 (+) Length   737 a.a.
NCBI ID   WP_257115342.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 687297..699510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS03365 (NQZ93_03365) cls 690594..692141 (+) 1548 WP_024382247.1 cardiolipin synthase -
  NQZ93_RS03370 (NQZ93_03370) recJ 692297..694510 (+) 2214 WP_257115342.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NQZ93_RS03375 (NQZ93_03375) - 694489..695658 (+) 1170 WP_024382249.1 DUF3114 domain-containing protein -
  NQZ93_RS03380 (NQZ93_03380) - 695673..696185 (+) 513 WP_257115343.1 adenine phosphoribosyltransferase -
  NQZ93_RS03385 (NQZ93_03385) metA 696289..697230 (+) 942 WP_024382250.1 homoserine O-succinyltransferase -
  NQZ93_RS03390 (NQZ93_03390) - 697240..697914 (+) 675 WP_002937132.1 DnaD domain-containing protein -
  NQZ93_RS03395 (NQZ93_03395) - 697916..698599 (+) 684 WP_002937128.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  NQZ93_RS03400 (NQZ93_03400) - 698589..699383 (+) 795 WP_014735659.1 Nif3-like dinuclear metal center hexameric protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82692.38 Da        Isoelectric Point: 4.5019

>NTDB_id=615277 NQZ93_RS03370 WP_257115342.1 692297..694510(+) (recJ) [Streptococcus suis strain DNR48]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKN
VERKDVVQAIYDEAKTMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELAQTLADYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAVYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKEARKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=615277 NQZ93_RS03370 WP_257115342.1 692297..694510(+) (recJ) [Streptococcus suis strain DNR48]
GTGATAAAACCTAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGCATGACCTCGGCATCTATTCTGAAAGAAACTCTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAACCGTTTTACAGATGGCTATGGGCCGAATCAGTCAGTTTACAAGTATT
TTATCGAGCAACAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAGGGAAATTATCCCTTCAAACATTTGGCGGGCTGCGGTGTAGCCTTCAAATTGGCCTGTGCTCTTCTTG
AAACTGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGACGATC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAAATTGCTCTCATGATTGATAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCAGGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCAGCAACCTGTTATCG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCGGTTGAAGCAGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCAAACCTTGGCTGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTACGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTGGAATCAGCAAGAACCATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCTGGATTTGATGTCGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTATCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAGCAACATCCTATTCCTGCAGGAGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAACGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAGACTATTTACCAATTTGATGAGTTTGATGTTCGCTACAAACTGAAAGATTTGGCTGTTTACTTAAAAATTAA
GGACAGTCTATTGGTTAAAATGATTCAGATTTTCCAAGAATTAGAATTTGTCACGATTACGGATGGGGTCATGCGGGTCA
ATAAAGAGGCACGGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAACTGAAAGAAACTGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.962

99.864

0.729
  recJ Bacillus subtilis subsp. subtilis str. 168

38.235

100

0.388