Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NQZ93_RS03160 Genome accession   NZ_CP102141
Coordinates   648386..648982 (+) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis strain DNR48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 643386..653982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS03140 (NQZ93_03140) - 644665..645189 (+) 525 WP_235181377.1 ATP-binding cassette domain-containing protein -
  NQZ93_RS03145 (NQZ93_03145) - 645477..645839 (+) 363 WP_050571059.1 hypothetical protein -
  NQZ93_RS03150 (NQZ93_03150) - 645866..646210 (+) 345 WP_235181378.1 ATP-binding cassette domain-containing protein -
  NQZ93_RS03155 (NQZ93_03155) pbp2b 646302..648377 (+) 2076 WP_024390568.1 penicillin-binding protein PBP2B -
  NQZ93_RS03160 (NQZ93_03160) recR 648386..648982 (+) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  NQZ93_RS03165 (NQZ93_03165) - 649087..650133 (+) 1047 WP_257115339.1 D-alanine--D-alanine ligase -
  NQZ93_RS03170 (NQZ93_03170) - 650221..650601 (+) 381 WP_012775215.1 OsmC family protein -
  NQZ93_RS03175 (NQZ93_03175) murF 650730..652091 (+) 1362 WP_024382227.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  NQZ93_RS03180 (NQZ93_03180) - 652182..652880 (+) 699 WP_024382228.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=615276 NQZ93_RS03160 WP_002935848.1 648386..648982(+) (recR) [Streptococcus suis strain DNR48]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=615276 NQZ93_RS03160 WP_002935848.1 648386..648982(+) (recR) [Streptococcus suis strain DNR48]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATTGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAAGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49