Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LF296_RS17300 Genome accession   NZ_CP085083
Coordinates   3681059..3682546 (+) Length   495 a.a.
NCBI ID   WP_272656235.1    Uniprot ID   A0AAJ6NMM0
Organism   Acinetobacter vivianii strain KJ-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3676059..3687546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS17275 (LF296_17275) ribD 3676969..3678069 (-) 1101 WP_069578108.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  LF296_RS17280 (LF296_17280) nrdR 3678082..3678546 (-) 465 WP_004773947.1 transcriptional regulator NrdR -
  LF296_RS17285 (LF296_17285) - 3678671..3680080 (-) 1410 WP_272655036.1 ammonium transporter -
  LF296_RS17290 (LF296_17290) glnK 3680148..3680486 (-) 339 WP_004656379.1 P-II family nitrogen regulator -
  LF296_RS17295 (LF296_17295) - 3680762..3680989 (+) 228 WP_004773944.1 accessory factor UbiK family protein -
  LF296_RS17300 (LF296_17300) comM 3681059..3682546 (+) 1488 WP_272656235.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LF296_RS17305 (LF296_17305) - 3682898..3683662 (+) 765 WP_272655037.1 sulfite exporter TauE/SafE family protein -
  LF296_RS17310 (LF296_17310) - 3683768..3684538 (-) 771 WP_272655038.1 TorF family putative porin -
  LF296_RS17315 (LF296_17315) - 3685278..3686570 (+) 1293 WP_123773875.1 OprD family outer membrane porin -
  LF296_RS17320 (LF296_17320) ppa 3686671..3687198 (-) 528 WP_004656389.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54052.74 Da        Isoelectric Point: 7.1749

>NTDB_id=615135 LF296_RS17300 WP_272656235.1 3681059..3682546(+) (comM) [Acinetobacter vivianii strain KJ-1]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLLEHSTEGFEFIGELALDGHLRPVSGALTIAMACQQAKHRLLLPTENLDEASQLPDFEVYAAQHL
QEVCAHFSGNAQLAAAPQRPNSAASAYQFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAPHSFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQAQELQDRTPTE
NSASVRQRVITAYEKQIQRQQCLNQALSPKLLEQYVLLDDSSTKIIEMAQQRLNLSARAYHRVLRVARTIADLAESDLIS
TSHLTEALSYRGNQT

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=615135 LF296_RS17300 WP_272656235.1 3681059..3682546(+) (comM) [Acinetobacter vivianii strain KJ-1]
ATGTCTTTTGCCAAGATATATACGAGAGGGCTATTGGGGTTACATGCTCCTCAGATTGAAGTTGAAGTCCACATTAGTTC
AGGCCTTCCTTCTTTAACAATTGTTGGCTTAGCTGAAGCCGCTGTACGTGAAAGTAAAGATCGTGTGCGTTCTGCCATCA
TCAATAGCGGTTTTCAGTTTCCCACCAAACGCTTAACCATCAATTTAGCACCAGCCGATTTACCCAAAGATGGTTCTCGA
CTGGACTTACCAATTGCCTTGGGGATTCTGATTGCTTCTGGACAATTACTAGAACACAGTACAGAAGGCTTTGAATTTAT
AGGAGAACTGGCGCTTGATGGACACTTACGTCCTGTTTCAGGGGCATTAACCATCGCAATGGCCTGCCAACAAGCCAAAC
ATCGCCTTCTATTGCCCACTGAAAATCTGGATGAAGCGAGCCAGCTTCCCGATTTTGAAGTCTATGCAGCGCAGCATTTA
CAAGAAGTTTGTGCACATTTTTCGGGCAATGCCCAGCTAGCGGCTGCACCACAACGACCAAACTCAGCCGCATCTGCCTA
TCAATTTGATCTTGCCGATGTCAAAGGTCAGTTACGTCCACGCCGAGCGTTAGAAATTGCCGCTGCGGGCGGACATTCTT
TATTATTTAAAGGCCCACCTGGCACAGGTAAAACCTTATTGGCTTCTCGCCTGCCATCGATTTTACCGCCGCTCAATGCG
CAGGAAAATCTAGAAGTCGCCAGTATTTATTCGGTGGCCAACGCACCGCACAGTTTTGGCCAGCGTCCATTTAGAGCACC
ACACCATACCGCTTCTGCAATTGCCTTGGTTGGCGGCGGCTCTCAACCCAAGCCTGGTGAAATCACTCTGGCTCATTTAG
GCGTTCTCTTTCTGGATGAATTGCCAGAATTTGATCGCAAGGTACTGGAAGTATTACGTCAACCTTTAGAGTCCAAAGAA
ATTGTGATTTCTCGTGCCGCACGACAAATGACCTTTCCTGCAAATTTCCAGTTTATTGCAGCAATGAACCCCTGCCCATG
TGGTTATGCCTTTAATCAGGACAGCCGTTGCCAATGTTCCCCTGAAAGTATTCAACGCTACCAAAATCGTATCTCAGGCC
CATTGCTGGATCGTATTGATTTACATATTGATGTACCGCCGTTACAAGCTCAGGAACTACAAGATCGTACGCCAACCGAG
AATTCTGCCAGCGTGCGGCAACGTGTGATCACTGCCTACGAAAAACAGATCCAAAGACAGCAGTGCTTAAATCAGGCTTT
ATCACCGAAGTTACTAGAACAGTATGTTCTGCTAGATGACAGTTCGACAAAAATTATTGAGATGGCCCAGCAACGTCTTA
ACTTGTCTGCACGCGCCTACCATCGTGTATTGCGTGTTGCACGCACGATTGCCGATTTAGCAGAAAGTGATCTGATCTCA
ACTAGTCATTTAACCGAAGCACTATCCTATCGCGGCAACCAAACCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.911

100

0.521
  comM Glaesserella parasuis strain SC1401

50.701

100

0.511
  comM Haemophilus influenzae Rd KW20

50.501

100

0.509
  comM Vibrio campbellii strain DS40M4

50.704

100

0.509
  comM Legionella pneumophila str. Paris

49.398

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.398

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.429

100

0.473