Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LF296_RS10105 Genome accession   NZ_CP085083
Coordinates   2145580..2146536 (-) Length   318 a.a.
NCBI ID   WP_272654245.1    Uniprot ID   A0AAJ6NFX2
Organism   Acinetobacter vivianii strain KJ-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2140580..2151536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS10080 (LF296_10080) - 2140968..2142188 (+) 1221 WP_272654241.1 MFS transporter -
  LF296_RS10085 (LF296_10085) - 2142204..2142818 (-) 615 WP_272656197.1 DUF2238 domain-containing protein -
  LF296_RS10090 (LF296_10090) - 2142916..2143869 (-) 954 WP_272654242.1 siderophore ABC transporter substrate-binding protein -
  LF296_RS10095 (LF296_10095) - 2143879..2144643 (-) 765 WP_272654243.1 ABC transporter ATP-binding protein -
  LF296_RS10100 (LF296_10100) - 2144634..2145590 (-) 957 WP_272654244.1 iron chelate uptake ABC transporter family permease subunit -
  LF296_RS10105 (LF296_10105) ceuB 2145580..2146536 (-) 957 WP_272654245.1 ABC transporter permease Machinery gene
  LF296_RS10110 (LF296_10110) - 2146819..2147802 (-) 984 WP_272654246.1 ion transporter -
  LF296_RS10115 (LF296_10115) - 2148071..2149528 (+) 1458 WP_272654247.1 DASS family sodium-coupled anion symporter -
  LF296_RS10120 (LF296_10120) - 2149638..2149859 (-) 222 WP_272654248.1 hypothetical protein -
  LF296_RS10125 (LF296_10125) - 2149948..2150697 (+) 750 WP_272654249.1 hypothetical protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34737.90 Da        Isoelectric Point: 9.8648

>NTDB_id=615120 LF296_RS10105 WP_272654245.1 2145580..2146536(-) (ceuB) [Acinetobacter vivianii strain KJ-1]
MIKRRYLILLLLPLAFISLFVGVGEMSLTGLWAGNPQDWQLFWTSRLPRLMAIIVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLVSIILLPSASIFIKTGFAIVVTLIGAMAFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQLDL
LQNLAGWLQGDFSTILNGQYELIYLSVPVLILIYIFANRFVLAGLGQDFATNLGLNYKQTLFIGLLLVSVITGVVIVTVG
AIPFLGLIVPNLVSLYLGDNIRRTLSHTALLGALLVLLCDVFGRVVIFPYEVSVSLIMGVVGSVIFLWLLLRRYRYAS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=615120 LF296_RS10105 WP_272654245.1 2145580..2146536(-) (ceuB) [Acinetobacter vivianii strain KJ-1]
ATGATTAAGCGGCGTTACCTGATTTTATTATTGCTTCCGCTGGCATTTATTTCCTTATTTGTCGGTGTGGGAGAGATGAG
CCTTACTGGTCTGTGGGCCGGCAATCCTCAAGACTGGCAGTTGTTCTGGACCAGTCGTTTACCACGTTTGATGGCGATTA
TTGTGGCGGGCGCTGGTCTGAGTGTCTGTGGTTTGATTATGCAGTCGCTGAGTCGTAACCGCTTTGTCTCTCCAACTACT
GCAGGTTTATATGACTGTGCACGTTTAGGCGTACTGGTTTCGATTATTTTACTGCCAAGTGCTTCGATCTTTATTAAAAC
TGGTTTTGCGATTGTCGTAACGCTCATTGGTGCGATGGCCTTTATGAGTATTCTGGCGACTTTAAAGCATCGTGATACGG
TTTTTGTTCCACTGGTGGGGATGATTTTTGGCAGTATTATTTCTGCATTTACCACCTTTATTGCGCTGCAACTGGATTTA
TTACAGAACTTGGCAGGTTGGTTGCAAGGGGACTTTTCCACCATTTTAAATGGTCAATATGAGCTGATCTATCTCAGCGT
GCCCGTTCTGATTCTAATTTATATCTTTGCCAATCGTTTTGTTTTGGCTGGATTAGGGCAGGATTTTGCGACGAATCTTG
GACTGAATTATAAGCAGACCCTTTTTATTGGCCTGTTACTGGTTTCGGTCATTACGGGTGTGGTGATTGTCACTGTGGGC
GCGATTCCATTTCTTGGATTGATTGTACCGAATCTGGTGAGCCTGTATCTGGGCGACAATATCCGTAGAACGCTTTCGCA
TACTGCATTGTTGGGTGCTTTGCTGGTTCTGCTCTGTGATGTATTTGGCAGGGTGGTGATTTTCCCTTATGAAGTCTCTG
TTAGTCTGATTATGGGTGTGGTGGGAAGCGTGATTTTCCTGTGGTTGCTACTCAGGAGATATCGTTATGCCTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.16

98.428

0.494