Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LF296_RS09760 Genome accession   NZ_CP085083
Coordinates   2079526..2079876 (-) Length   116 a.a.
NCBI ID   WP_050560016.1    Uniprot ID   A0AAJ6NMI3
Organism   Acinetobacter vivianii strain KJ-1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2074526..2084876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS09730 (LF296_09730) tadA 2074847..2075356 (-) 510 WP_272654207.1 tRNA adenosine(34) deaminase TadA -
  LF296_RS09735 (LF296_09735) - 2075363..2076487 (-) 1125 WP_171067027.1 enoyl-CoA hydratase/isomerase family protein -
  LF296_RS09740 (LF296_09740) ung 2076484..2077197 (-) 714 WP_272654208.1 uracil-DNA glycosylase -
  LF296_RS09745 (LF296_09745) - 2077241..2077837 (-) 597 WP_004772509.1 6-pyruvoyl trahydropterin synthase family protein -
  LF296_RS09750 (LF296_09750) gspK 2077945..2078904 (-) 960 WP_272654209.1 type II secretion system minor pseudopilin GspK -
  LF296_RS09755 (LF296_09755) xcpW 2078909..2079526 (-) 618 WP_272654210.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LF296_RS09760 (LF296_09760) xcpV 2079526..2079876 (-) 351 WP_050560016.1 type II secretion system protein Machinery gene
  LF296_RS09765 (LF296_09765) - 2080094..2080642 (-) 549 WP_069576597.1 pilus assembly FimT family protein -
  LF296_RS09770 (LF296_09770) - 2080654..2081262 (-) 609 WP_004772516.1 TetR/AcrR family transcriptional regulator -
  LF296_RS09775 (LF296_09775) - 2081303..2082076 (-) 774 WP_004772518.1 TatD family hydrolase -
  LF296_RS09780 (LF296_09780) - 2082101..2082445 (-) 345 WP_004772519.1 PilZ domain-containing protein -
  LF296_RS09785 (LF296_09785) - 2082804..2083109 (-) 306 WP_272654211.1 hypothetical protein -
  LF296_RS09790 (LF296_09790) - 2083312..2084295 (-) 984 WP_272654212.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12916.94 Da        Isoelectric Point: 9.9652

>NTDB_id=615119 LF296_RS09760 WP_050560016.1 2079526..2079876(-) (xcpV) [Acinetobacter vivianii strain KJ-1]
MVALAIFAVAAIALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEMNQEWLDGTQSKQVTSQGETWQIDKKAQSTISPK
IQRIELQVSLFNKEQGKVEAGITNLVFFNYPAKART

Nucleotide


Download         Length: 351 bp        

>NTDB_id=615119 LF296_RS09760 WP_050560016.1 2079526..2079876(-) (xcpV) [Acinetobacter vivianii strain KJ-1]
ATGGTGGCGTTGGCGATCTTTGCTGTTGCTGCGATTGCGTTAACCAAGGTAGCGATGCAATATACGCAATCGACATCAAA
TGCCATTTTAAGAACCAAAGCACAATTTGTGGCCATGAATGAAGTGGCAATGATGGAAATGAATCAAGAGTGGCTGGATG
GAACACAATCCAAGCAAGTGACCTCTCAAGGGGAAACTTGGCAAATCGATAAAAAAGCACAATCTACAATCAGCCCTAAA
ATCCAGAGAATTGAACTCCAAGTCAGTTTATTTAATAAAGAACAAGGTAAGGTCGAAGCGGGGATTACCAATCTTGTGTT
CTTTAACTATCCTGCCAAAGCTAGAACATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

83.478

99.138

0.828